RNA id: TU105314



Basic Information


Item Value
RNA id TU105314
length 748
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G78743
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36061790 ~ 36062537 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtcctattaaagttaaaaaatataattacatgtcatttttaaatgaatattcggttttctttcagaccatttatatttatggatatttttttcaaataaaattaaaagattctaaatgaaaacatggcattttatccaaatcaaaagctcgccttggatgtagcatacaatactgactcaagtgattcaagtgactcgcataacccggatcagtttagtgagtgactcagaataacctgaatcctaaaaaggaattgagtttgccaggcctactTGTGGCACTCTTACACTTCATGaacttacttcctgctttgctcctttATAACAGGAGGCCACTAGAGTGTGTTGCcactataaatgtaaatataattcGTAATTTGCTGCTTGAACCAACgagttatgtgttttttttcggGTGAGGACAGTCATAATGTAGTAACCGTAATATGTAATTTGGTGCAAGCATTCTGAGTTGTTTCCTACAATTCACAGCATGTCATGTGTTATTAGACAGGTTGTTGCCACAACAACGCTTGCTTTGGCGGAGAAAAAATATTTCTGTGTTGCTGTTGTGTTTCATCACATTATCTCTGTGCACCACCCTTCTTCTCAGAGAGTACACATGCATTAGTAAGTGTTGTGTAGAGGTCAGCATCAAACCCTACAGGCTGTTCTTTGGTCTTGGCACCTTGTTTAGTTCTGTTATCGCTTTGTGACTCAGTCATGCAATAAATGACATTCTCCTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105299 lncRNA downstream 77751 35982408 ~ 35984039 (-) True G78729
TU105300 lncRNA downstream 78862 35982408 ~ 35982928 (-) False G78729
TU105261 lncRNA downstream 240139 35821285 ~ 35821651 (-) False G78698
TU105262 lncRNA downstream 240139 35821285 ~ 35821651 (-) True G78698
TU105248 lncRNA downstream 320380 35741130 ~ 35741410 (-) True G78691
TU105750 lncRNA upstream 29665 36092202 ~ 36093639 (-) True G79030
TU105755 lncRNA upstream 46925 36109462 ~ 36141399 (-) True G79033
TU105761 lncRNA upstream 50358 36112895 ~ 36171303 (-) True G79039
TU105763 lncRNA upstream 56500 36119037 ~ 36119489 (-) True G79041
TU105766 lncRNA upstream 59926 36122463 ~ 36186239 (-) True G79043
XM_039804947.1 mRNA downstream 64019 35994652 ~ 35997771 (-) True LOC120561730
XM_039807236.1 mRNA downstream 111632 35946383 ~ 35950158 (-) True LOC120563120
XM_039807237.1 mRNA downstream 122812 35933034 ~ 35938978 (-) True LOC120563121
XM_039806166.1 mRNA downstream 219558 35835102 ~ 35842232 (-) True LOC120562453
XM_039805925.1 mRNA downstream 241993 35578709 ~ 35819797 (-) True si:dkey-22o22.2
XM_039804897.1 mRNA upstream 1025 36063562 ~ 36071103 (-) True kcnv1
XM_039807181.1 mRNA upstream 13083 36075620 ~ 36090492 (-) False LOC120563092
XM_039807180.1 mRNA upstream 13083 36075620 ~ 36090447 (-) False LOC120563092
XM_039807183.1 mRNA upstream 13083 36075620 ~ 36090447 (-) False LOC120563092
XM_039807179.1 mRNA upstream 13083 36075620 ~ 36090447 (-) True LOC120563092
TU105304 other downstream 35248 36024731 ~ 36026542 (-) True G78733
XR_005639861.1 other downstream 752393 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 884551 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 925629 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 926728 35134991 ~ 35135062 (-) True trnap-ugg_1
TU105756 other upstream 40460 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 286692 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 286692 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 602005 36664542 ~ 36748224 (-) False LOC120563186
TU105962 other upstream 1045446 37107983 ~ 37206266 (-) False LOC120562574

Expression Profile