RNA id: TU105334


Basic Information

Item Value
RNA id TU105334
length 1049
RNA type TUCP
GC content 0.42
exon number 5
gene id G78759
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36110851 ~ 36190839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagcaggagacggttgtaaagtttaacgttggtagtccccagagaagaagttggtcattTAATGGCGCAGATCAGAATCCaaattaacacttttgcatGGTACTATATCCTGttacattctcattaggggctgagcccccctaaaggtctgatcctagactCACCCCTGCACTCAAGCaccaacatactgtacagtatgtgtgaaaCCCATCCCCCTTTAGAGGGTGAAAGTGGAAATAGAAGTTGTTTCCTGCTGAACTTAACCGGCTGTTTCTATCTGCGTCAGTGTGTTTTAACAGCGACAGGTCGAGGTGTTGATCTGAAGACTAACCGATGTTCTAAAGTCAAGAAGATGGGAGGATCTGCGTCTACAAGTGACCGTCCCAGATTCAATGGAAATCCTCCAGGCTTTAACACTGAACCTAGACCTTCACAAACAAGTGACCAGTCTACTTCAAGTAATCAGGAGAACCAGAACACCCTGAAGCGGATTCGATACGAACATACACCAAGGGTGTCCTCATTTGAGTTAAGTCTTCCAAACTTCTGACACTGAACCCAACCTTTATGAAACAAGCTCATCACATGAAGATCTGAAGAAGAATGAAGAAACGCCACCAGAGGGAAATCTTCATTAGTTTCATATAAGTTTGTTTTCATACAAAATAGTTTTAtacataattatgttttttttcttcattaacGTGTGACTTGTGTATAGATTTTCAGCTTAACTCAACAGCGGTTGTCACCACCATGTTCAGTGTTTTCTGGCAAAGTTAGATTTTATGAGAAAAATGACGTTTCAAAAGAgtagaacatttattttttacactttcAGTGATCAGAAGTTcaaatgttttcctctgtgaGTCGACTTGTAGTCGTCAACTTTTTGGCAGCAGAAGAAAAGAGTCAGACTTACCAACGCTTTCTCACTCCCATCAcataaaatacggacgcttggtcaggtgcctttggcgttgttattgacgctaaaagtctcctttagcgtcagatCCAAACGCGCTGGGTCGGGACTATTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105342 lncRNA upstream 4479 36128879 ~ 36133280 (+) True G78759
TU105328 lncRNA upstream 49663 36087873 ~ 36088096 (+) True G78756
TU105307 lncRNA upstream 103107 36034348 ~ 36034652 (+) True G78736
TU105281 lncRNA upstream 174254 35962773 ~ 35963505 (+) True G78716
TU105272 lncRNA upstream 208863 35928440 ~ 35928896 (+) True G78707
TU105332 lncRNA downstream 2455 36143677 ~ 36159302 (+) False G78759
XR_005639918.1 lncRNA downstream 20558 36161780 ~ 36172164 (+) True LOC120563188
TU105368 lncRNA downstream 116938 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA downstream 147570 36288792 ~ 36289154 (+) True G78776
TU105357 lncRNA downstream 193895 36335117 ~ 36339554 (+) True G78770
XM_039807327.1 mRNA upstream 8517 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA upstream 8517 36112083 ~ 36129242 (+) False LOC120563175
XM_039807324.1 mRNA upstream 8517 36116750 ~ 36129242 (+) True LOC120563175
XM_039807326.1 mRNA upstream 8517 36116750 ~ 36129242 (+) False LOC120563175
XM_039807325.1 mRNA upstream 8517 36116792 ~ 36129242 (+) False LOC120563175
XM_039807329.1 mRNA downstream 36985 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA downstream 36985 36178207 ~ 36190415 (+) False LOC120563177
XM_039807339.1 mRNA downstream 219478 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 227472 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 251035 36392257 ~ 36450204 (+) True LOC120563181
TU105193 other upstream 249587 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 729077 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 949560 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1281227 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1593380 34529355 ~ 34544379 (+) False G78200
TU105369 other downstream 152765 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 251030 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 251030 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 550171 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 785490 36926712 ~ 36928871 (+) False G78888

Expression Profile