RNA id: TU105341


Basic Information

Item Value
RNA id TU105341
length 394
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G78759
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36110851 ~ 36190839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACTAGACCATCCTCAAAATAAGTAAATTGTAGCACACCTTAGgcaattttaacaaaataaaatgtaacttcCCACAATATTGTGGCTAGTGGAAATGCTGGGTGGCCAGTAACTTTGGAAAACCACAGTGGCTGCTGAGCAAAAGAAGTTGAGGTCAAGCCCCGTTTAAACATGATAAATTAATCTATTATCAAAATATGCAAATTCCCTGTTGATTTGCTGCAGTTATCATTGCAGGAATCCTGTGTATTTATCGACCTGTAATTTATATAATATAGTTTTATAGACATCACTTTATACCTGCATCGGTCTATTCactgttttgtttgtctgtgcatAAACACTAACATGTTATGGATTCATTAAAAGTAACCTAAAAGTATAATTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105328 lncRNA upstream 40783 36087873 ~ 36088096 (+) True G78756
TU105307 lncRNA upstream 94227 36034348 ~ 36034652 (+) True G78736
TU105281 lncRNA upstream 165374 35962773 ~ 35963505 (+) True G78716
TU105272 lncRNA upstream 199983 35928440 ~ 35928896 (+) True G78707
TU105271 lncRNA upstream 219810 35908820 ~ 35909069 (+) True G78706
XR_005639918.1 lncRNA downstream 2478 36161780 ~ 36172164 (+) True LOC120563188
TU105368 lncRNA downstream 98858 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA downstream 129490 36288792 ~ 36289154 (+) True G78776
TU105357 lncRNA downstream 175815 36335117 ~ 36339554 (+) True G78770
TU105400 lncRNA downstream 238747 36398049 ~ 36415884 (+) True G78798
XM_039807323.1 mRNA upstream 18747 36092199 ~ 36110132 (+) True dek
XM_039807298.1 mRNA upstream 102308 36024626 ~ 36026571 (+) True LOC120563160
XM_039805921.1 mRNA upstream 227987 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 244944 35875127 ~ 35883935 (+) True LOC120562454
XM_039805924.1 mRNA upstream 256635 35865849 ~ 35872244 (+) False LOC120562279
XM_039807329.1 mRNA downstream 18905 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA downstream 18905 36178207 ~ 36190415 (+) False LOC120563177
XM_039807339.1 mRNA downstream 201398 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 209392 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 232955 36392257 ~ 36450204 (+) True LOC120563181
TU105193 other upstream 240707 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 720197 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 940680 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1272347 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1584500 34529355 ~ 34544379 (+) False G78200
TU105369 other downstream 134685 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 232950 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 232950 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 532091 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 767410 36926712 ~ 36928871 (+) False G78888

Expression Profile