RNA id: TU105373


Basic Information

Item Value
RNA id TU105373
length 320
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G78776
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36288792 ~ 36289154 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagggaggtgtgttcaggtgcattctggggtgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggtgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105344 lncRNA upstream 97953 36110851 ~ 36190839 (+) False G78759
XR_005639918.1 lncRNA upstream 116628 36161780 ~ 36172164 (+) True LOC120563188
TU105341 lncRNA upstream 129490 36128879 ~ 36159302 (+) False G78759
TU105332 lncRNA upstream 129490 36143677 ~ 36159302 (+) False G78759
TU105342 lncRNA upstream 155512 36128879 ~ 36133280 (+) True G78759
TU105357 lncRNA downstream 45963 36335117 ~ 36339554 (+) True G78770
TU105400 lncRNA downstream 108895 36398049 ~ 36415884 (+) True G78798
TU105421 lncRNA downstream 157493 36446647 ~ 36447215 (+) False G78813
TU105422 lncRNA downstream 157555 36446709 ~ 36507814 (+) True G78813
TU105392 lncRNA downstream 160629 36449783 ~ 36450210 (+) False LOC120563181
XM_039807329.1 mRNA upstream 98377 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA upstream 98377 36178207 ~ 36190415 (+) False LOC120563177
XM_039807324.1 mRNA upstream 159550 36116750 ~ 36129242 (+) True LOC120563175
XM_039807339.1 mRNA downstream 71546 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 79540 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 103103 36392257 ~ 36450204 (+) True LOC120563181
XM_039807340.1 mRNA downstream 239327 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 339747 36628901 ~ 36670029 (+) True LOC120562456
TU105334 other upstream 147570 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 400620 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 880110 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 1100593 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1432260 34839157 ~ 34856532 (+) False LOC120562567
TU105369 other downstream 4833 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 103098 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 103098 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 402239 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 637558 36926712 ~ 36928871 (+) False G78888

Expression Profile