RNA id: TU105392


Basic Information

Item Value
RNA id TU105392
length 389
lncRNA type sense_over
GC content 0.58
exon number 2
gene id LOC120563181
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36392252 ~ 36465230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGCCTCCTACTCGCCGCTGCTCGGCGGGCAGGGCCAGCCGGCGCTCAGCACGTCGCCTAGGAGACGGGCGCAGCTCTCCCCGCTAATCCTGCCCATGGGAGCGGAGACGAGAAGGCATCACTCCAAACAGTTCTCCCCCACCATCTCCCCCACGCTGTCCTCCATCACACAGGTAACGCATCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105421 lncRNA upstream 2568 36446647 ~ 36447215 (+) False G78813
TU105400 lncRNA upstream 33899 36398049 ~ 36415884 (+) True G78798
TU105357 lncRNA upstream 110229 36335117 ~ 36339554 (+) True G78770
TU105368 lncRNA upstream 155396 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA upstream 160629 36288792 ~ 36289154 (+) True G78776
TU105419 lncRNA downstream 19046 36469256 ~ 36507814 (+) False G78813
TU105438 lncRNA downstream 50438 36500648 ~ 36706609 (+) True G78822
TU105459 lncRNA downstream 84583 36534793 ~ 36590475 (+) False G78836
TU105463 lncRNA downstream 84583 36534793 ~ 36590475 (+) False G78836
TU105464 lncRNA downstream 128622 36578832 ~ 36643491 (+) False G78837
XM_039807338.1 mRNA upstream 66687 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 82758 36360700 ~ 36367025 (+) True nat16l
XM_039807329.1 mRNA upstream 259368 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA upstream 259368 36178207 ~ 36190415 (+) False LOC120563177
XM_039807325.1 mRNA upstream 320541 36116792 ~ 36129242 (+) False LOC120563175
XM_039807340.1 mRNA downstream 78271 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 178691 36628901 ~ 36670029 (+) True LOC120562456
XM_039806171.1 mRNA downstream 235726 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 310300 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 359350 36809560 ~ 36829422 (+) False LOC120563178
TU105393 other upstream 15558 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 98788 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 308561 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 561611 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 1041101 35405375 ~ 35408682 (+) True G78594
TU105437 other downstream 241183 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 476502 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 980961 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 1080480 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 1080480 37530690 ~ 37533069 (+) True G79007

Expression Profile