RNA id: XM_039807337.1


Basic Information

Item Value
RNA id XM_039807337.1
length 1751
RNA type mRNA
GC content 0.63
exon number 10
gene id LOC120563181
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36392252 ~ 36465230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aCTACGTCAAGTCGTCCCGTCAGCTCGGCGAAGATGTCTGCGACGGGTACAGGCGGCTGTGGACCCGGACCCGGACCCGCCTCGGGCGCCGGGTCCGGGGCTTCCAACCCACGAAAGTTTAGCGAGAAGATAGCGCTGCATACCCAGCGACAGGCCGAGGAAACAGCCGCTTTCCAGGAGGTTATGATGGACATCACCTCGACCAGGCTTCAGGCCCAGAAGCTCCGTCTCGCCAGGAGTCAGGGTCCGTACTACGGCGGCTCGCTACCCAACGTTAACCAGATCGGCAGGAACCCTCAGGACTTCCAGggcTCCTTCCCGTCCACTCTGGAGTCCACCCGGTCTACCCGACACCACGGTCTGGTGGAGCGCGTCCAGAGGGATCGCCGCTTCATCACACCGGTCCGACCGTACCGCAACCGACAAATGGACAGCTCGCAGTATAACTCCGCCTACCTGTCCCCGCCTCCGGACCCCGGCTGGAGAAGGACGAACTCAGACTCGGCCCTCCACACCAGCGTGATGAACCCTCCCACGGGAGACCCCTTCACCACGGGAGGACCCACCCTCACCCCCCAGAGCAACAGACGCAGCGgtCAGAGTGATGGAGAGGGCAGAAGAATGTTTCCGTACCCTGTTCCCCCCATCGAAGAGAACGTGCTGGACGAGGGGAAGCTGCTCAAACCCTGGGACACCAAGAAGTTGCCTCTGTTGTCGTCCCGACCCAAGTCCTGTGAAGTCCCGGGCATCAATATCTTCACGTCTCCGGAGCAGCCGTCCGCGCCTTCTCACGGCATCCCGTCGGCGCTGAACACCGGCGGCTCGCTGCCGGACCTGTCCAGCCTCCACTTCCCCTCGCCGCTGCCCACGCCGCTGGACCAGGACGAGCCGGGCTACCCAGGATCCTCCTCTCTGAGCGGGGGCAGCAGCACGGGGAACCTGGCCTCCACGCTCACCCAGCTGGGCATCAACGCCGCCAACGCACAGGCCGGCAACGGCGgcttccaccaccaccacacgcCAGgTCTCCTGGCGTCCCTACAGAGCACGCTCAGTAACCCCTCCCTGCAGTCGTCGCTGAGCAACCCCAACATCCGGTCGTCGCTGAGCAACCACTCCTTCTCCAACTCCTTGAGCTCTGCGTCGCTGCACTCGTCGCTTAGCAACCCCTCTCTGTCCCTCAGCCCCTCCCCGTCCCTGCCGTCCTCCCTGAGCAGCCAATCGCTGCATTCCTCCCTCAGTAGCTCCTCCCTCCAGTCGGTGTCCAGCGGTAACCCCGGCTACAGCAGCGCCAGCGGCGGCGCTGGCGCTGGTGGCTCCGGCTCCTGCTCGGCCTCCTACTCGCCGCTGCTCGGCGGGCAGGGCCAGCCGGCGCTCAGCACGTCGCCTAGGAGACGGGCGCAGCTCTCCCCGCTAATCCTGCCCATGGGAGCGGAGACGAGAAGGCATCACTCCAAACAGTTCTCCCCCACCATCTCCCCCACGCTGTCCTCCATCACACAGGTAACGCATCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACA

Function

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG:

id description
K16333 CRTC2, TORC2; CREB-regulated transcription coactivator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105357 lncRNA upstream 52703 36335117 ~ 36339554 (+) True G78770
TU105368 lncRNA upstream 97870 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA upstream 103103 36288792 ~ 36289154 (+) True G78776
XR_005639918.1 lncRNA upstream 220093 36161780 ~ 36172164 (+) True LOC120563188
TU105332 lncRNA upstream 232955 36143677 ~ 36159302 (+) False G78759
TU105419 lncRNA downstream 19052 36469256 ~ 36507814 (+) False G78813
TU105438 lncRNA downstream 50444 36500648 ~ 36706609 (+) True G78822
TU105459 lncRNA downstream 84589 36534793 ~ 36590475 (+) False G78836
TU105463 lncRNA downstream 84589 36534793 ~ 36590475 (+) False G78836
TU105464 lncRNA downstream 128628 36578832 ~ 36643491 (+) False G78837
XM_039807338.1 mRNA upstream 9161 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 25232 36360700 ~ 36367025 (+) True nat16l
XM_039807329.1 mRNA upstream 201842 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA upstream 201842 36178207 ~ 36190415 (+) False LOC120563177
XM_039807326.1 mRNA upstream 263015 36116750 ~ 36129242 (+) False LOC120563175
XM_039807340.1 mRNA downstream 78277 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 178697 36628901 ~ 36670029 (+) True LOC120562456
XM_039806171.1 mRNA downstream 235732 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 310306 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 359356 36809560 ~ 36829422 (+) False LOC120563178
TU105369 other upstream 41262 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 251035 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 504085 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 983575 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 1204058 35188118 ~ 35188199 (+) True trnas-aga_7
TU105437 other downstream 241189 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 476508 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 980967 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 1080486 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 1080486 37530690 ~ 37533069 (+) True G79007

Expression Profile