RNA id: TU105419


Basic Information

Item Value
RNA id TU105419
length 475
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G78813
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36446647 ~ 36507814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtctgactgtgtgtgtgtgtctgtctgactgtgtctgtctgactgcgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgactgtgtgtgtcggtctgtctgactgcgtgtctgtgtgtgtgtgtctgtctgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgtgtgtgtgtctgtctgtgtgtgtgtttgtgtgtctgtctctgtgaatgtctgtgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcaatcatctgtttgttgttattattatgcaATAAACCAGTTCATGCAGTTACACACTCTGCCAGTTGGGGAGCTGTTGACCagcggtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105392 lncRNA upstream 19046 36449783 ~ 36450210 (+) False LOC120563181
TU105421 lncRNA upstream 22041 36446647 ~ 36447215 (+) False G78813
TU105400 lncRNA upstream 53372 36398049 ~ 36415884 (+) True G78798
TU105357 lncRNA upstream 129702 36335117 ~ 36339554 (+) True G78770
TU105368 lncRNA upstream 174869 36258160 ~ 36294387 (+) False G78772
TU105459 lncRNA downstream 26979 36534793 ~ 36590475 (+) False G78836
TU105463 lncRNA downstream 26979 36534793 ~ 36590475 (+) False G78836
TU105464 lncRNA downstream 71018 36578832 ~ 36643491 (+) False G78837
TU105471 lncRNA downstream 73151 36580965 ~ 36629043 (+) False LOC120562456
TU105479 lncRNA downstream 74129 36581943 ~ 36600679 (+) True G78843
XM_039807337.1 mRNA upstream 19052 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 86160 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 102231 36360700 ~ 36367025 (+) True nat16l
XM_039807329.1 mRNA upstream 278841 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA upstream 278841 36178207 ~ 36190415 (+) False LOC120563177
XM_039807340.1 mRNA downstream 20667 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 121087 36628901 ~ 36670029 (+) True LOC120562456
XM_039806171.1 mRNA downstream 178122 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 252696 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 301746 36809560 ~ 36829422 (+) False LOC120563178
TU105394 other upstream 4026 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 35031 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 118261 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 328034 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 581084 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 183579 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 418898 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 923357 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 1022876 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 1022876 37530690 ~ 37533069 (+) True G79007

Expression Profile