RNA id: TU105422


Basic Information

Item Value
RNA id TU105422
length 803
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G78813
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36446647 ~ 36507814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtttgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctctgtctgtttgtctgcgtgtgtgtgtgtcggtgtgtgtgtgtgtgtctgtctgtctgtgtgtgtctgtttctgtgtgtgtgtgtgtgtgtctgtgtctgtgtctgtctgtgtgtgtgtctctgtctgtctgtctgtctgtctgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctttctgtgtcggtctgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgtgtgtgtctgtctgtgtgtgtgtttgtgtgtctgtctctgtgaatgtctgtgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcaatcatctgtttgttgttattattatgcaATAAACCAGTTCATGCAGTTACACACTCTGCCAGTTGGGGAGCTGTTGACCagcggtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105400 lncRNA upstream 30825 36398049 ~ 36415884 (+) True G78798
TU105357 lncRNA upstream 107155 36335117 ~ 36339554 (+) True G78770
TU105368 lncRNA upstream 152322 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA upstream 157555 36288792 ~ 36289154 (+) True G78776
XR_005639918.1 lncRNA upstream 274545 36161780 ~ 36172164 (+) True LOC120563188
TU105459 lncRNA downstream 26979 36534793 ~ 36590475 (+) False G78836
TU105463 lncRNA downstream 26979 36534793 ~ 36590475 (+) False G78836
TU105464 lncRNA downstream 71018 36578832 ~ 36643491 (+) False G78837
TU105471 lncRNA downstream 73151 36580965 ~ 36629043 (+) False LOC120562456
TU105479 lncRNA downstream 74129 36581943 ~ 36600679 (+) True G78843
XM_039807338.1 mRNA upstream 63613 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 79684 36360700 ~ 36367025 (+) True nat16l
XM_039807329.1 mRNA upstream 256294 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA upstream 256294 36178207 ~ 36190415 (+) False LOC120563177
XM_039807325.1 mRNA upstream 317467 36116792 ~ 36129242 (+) False LOC120563175
XM_039807340.1 mRNA downstream 20667 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 121087 36628901 ~ 36670029 (+) True LOC120562456
XM_039806171.1 mRNA downstream 178122 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 252696 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 301746 36809560 ~ 36829422 (+) False LOC120563178
TU105393 other upstream 12484 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 95714 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 305487 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 558537 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 1038027 35405375 ~ 35408682 (+) True G78594
TU105437 other downstream 183579 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 418898 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 923357 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 1022876 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 1022876 37530690 ~ 37533069 (+) True G79007

Expression Profile