RNA id: TU105460


Basic Information

Item Value
RNA id TU105460
length 361
lncRNA type sense_over
GC content 0.50
exon number 3
gene id G78836
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36534793 ~ 36642606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAAACCTCCACCTTGACCTGcagacagaggcacacacacacacacacacacacacacacagagacacacacacacacacacagacacacacacacacacacacagacacacacacacacacacacagagacacacacacacacacacagacacacacacacacacacacagagacacacacacacacacacacagacacagacacacacacacacacacacacacacacagagacacacacacacacagataaacagacacagatagagacacacacacagatacacacacacacacacacacacacacagagagacacacacacacacacacagagacacacacacagagacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105422 lncRNA upstream 82017 36446709 ~ 36507814 (+) True G78813
TU105419 lncRNA upstream 82017 36469256 ~ 36507814 (+) False G78813
TU105392 lncRNA upstream 139621 36449783 ~ 36450210 (+) False LOC120563181
TU105421 lncRNA upstream 142616 36446647 ~ 36447215 (+) False G78813
TU105400 lncRNA upstream 173947 36398049 ~ 36415884 (+) True G78798
TU105467 lncRNA downstream 201 36642807 ~ 36643491 (+) False G78837
TU105505 lncRNA downstream 15402 36658008 ~ 36658306 (+) True G78862
TU105506 lncRNA downstream 23991 36666597 ~ 36667363 (+) True G78863
TU105445 lncRNA downstream 42227 36684833 ~ 36713725 (+) False G78825
TU105513 lncRNA downstream 49592 36692198 ~ 36694660 (+) False G78865
XM_039807340.1 mRNA upstream 48301 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 139627 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 206735 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 222806 36360700 ~ 36367025 (+) True nat16l
XM_039807330.1 mRNA upstream 399416 36178207 ~ 36190415 (+) False LOC120563177
XM_039806171.1 mRNA downstream 43330 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 117904 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 166954 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 169262 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 173786 36816392 ~ 36829422 (+) True LOC120563178
TU105394 other upstream 124601 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 155606 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 238836 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 448609 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 701659 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 48787 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 284106 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 788565 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 888084 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 888084 37530690 ~ 37533069 (+) True G79007

Expression Profile