RNA id: TU105471


Basic Information

Item Value
RNA id TU105471
length 283
lncRNA type sense_over
GC content 0.55
exon number 2
gene id LOC120562456
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36580965 ~ 36670029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGTGTGGTTTTTTTGTGACTTGACAACATGGCCGCTGCGGCTCCTCCGACAGCAAACATGGACGTTACATGTGAGAGAAGAATGACCTAAACATGATCCTTCCACTTATCTGTGGGAACAACCAGCACGCGCAACAAGtGGAGGGCAGACAGACGGCATGACCGAGGAGAAATGTCCCCAGCTGGTGGACTACTTTGTAGTGGCAGGACTCGACCCTGGGCCTGGAGGCCCCTAGACGAGGATGGCAAAACCTgcaactcctcctcctcctcctcctcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105422 lncRNA upstream 73151 36446709 ~ 36507814 (+) True G78813
TU105419 lncRNA upstream 73151 36469256 ~ 36507814 (+) False G78813
TU105392 lncRNA upstream 130755 36449783 ~ 36450210 (+) False LOC120563181
TU105421 lncRNA upstream 133750 36446647 ~ 36447215 (+) False G78813
TU105400 lncRNA upstream 165081 36398049 ~ 36415884 (+) True G78798
TU105468 lncRNA downstream 12790 36641833 ~ 36643491 (+) True G78837
TU105466 lncRNA downstream 13114 36642157 ~ 36643491 (+) False G78837
TU105469 lncRNA downstream 13114 36642157 ~ 36643491 (+) False G78837
TU105470 lncRNA downstream 13114 36642157 ~ 36643491 (+) False G78837
TU105467 lncRNA downstream 13764 36642807 ~ 36643491 (+) False G78837
XM_039807340.1 mRNA upstream 39435 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 130761 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 197869 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 213940 36360700 ~ 36367025 (+) True nat16l
XM_039807330.1 mRNA upstream 390550 36178207 ~ 36190415 (+) False LOC120563177
XM_039806171.1 mRNA downstream 56893 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 131467 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 180517 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 182825 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 187349 36816392 ~ 36829422 (+) True LOC120563178
TU105394 other upstream 115735 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 146740 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 229970 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 439743 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 692793 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 62350 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 297669 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 802128 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 901647 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 901647 37530690 ~ 37533069 (+) True G79007

Expression Profile