RNA id: XM_039806169.1


Basic Information

Item Value
RNA id XM_039806169.1
length 2377
RNA type mRNA
GC content 0.63
exon number 19
gene id LOC120562456
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36580965 ~ 36670029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tGGAGGGCAGACAGACGGCATGACCGAGGAGAAATGTCCCCAGCTGGTGGACTACTTTGTAGTGGCAGGACTCGACCGGGCCTGGAGGCCCCTAGACGAGGATGGCAAAACCTgcaactcctcctcctccctcctcccctcgcctccttcctcctcctcctcctcaaCGAAAGGGGTGGAGTCGGGTGAGATTCGTGATCGCGGGCTCTTGGAGGAAGTGCCCGAGGGCTTCACCTGCATCGAGAAGACGCTGGGCGGCCACTCGGCCGAGCTGAGCGCCGGGCTCATCAACAACCCTCACCTGTACCTGTGCTATCACCGATGGACAAAGAaaCTGGCAGACGATGAGCAGGTCCAGGACCTGGTTCTGTATGAGGGGAAGGAGCAGCTGAAGCAGAGCTGGTTCGTCATCGAGACGACGCCCTACAGCCGCTCGGCCAACCTGAGCTCCGGCGGCGCCCCGACGGCCCACCGCGTCTTCCTGACGTACCGCAGGGCCCTGGACTCGCAGGGCCTCCACACGCTGGGGGTCACCGACATCGCCCTGCTGCTGCCCAGCAAAGGGGAGGTCGCCCCGCACACCTTCTGCCGCGTCGACAAGAACCTCAACACCGGCATGTGGGGTCCCGCTCTGTACGTGTGCTACAAGAGAGCGGTGGCCAAAGCCAACGCCCTGGTCTACAAAGCCAGTCTGATCAGCCGGTACCCGGAGGAGGACCTGGAGGCCTTCCCTCTGCCGGAGTCGGTGCCGGTCTTCTGTCTGCCGATGGGCGCCACCGTGGAGAGCTGGCCTCTCAACACCAAGTACCAGCTGCCCGTCTTCTCCACCTTCGTCCTCACCTCCGCCTCCGGGGACAAGGTCTACGGAGCAGCCATCCAGTTCTACGAGTCCTTCTCCCGGGACCTGCTGTCGGAGCGGCAGAGCGTGCGGCTCGGGCTGCTCAGCGTGGTGGACCGGAGGCCCATCACCAGCCGCAGCCTGCAGGTGAAGAAGAGCATCTGTGTCCTCTCCCACTGGCCCTTCTTCACCGTCTTCCAGAAGTTCCTCACCTTCGTGTACAGATACTCCATCTCCGGGCCCCACGTCCTGCCGCTCGAAAAacacATCTCCAGCTTCATGCACAACGTCCCGTTTCCTTCCCCGCAGCGGCCTCGCATCCTCGTTCAGCTCTCTCCGTATGACAACCTGCTGCTCTgccagccggtctcctctcctctcccgcTCAGGTCAGTGTACTGCAGTACCGACACAACCGctgtgtgtgtatctgtgtgtctccaGATGAGCTTCCCTCTGCGCTGGATCTGTCCCTACATCCCTCTGTGTCCGCTGCAGATGGCCGACGTGCTGCTGGCGCCGATGCCCTTCATCGTGGGGGTCCACTCCAGCTACTTCGACCTGTACGACCCCCCCACAGACGTGGTCTGCGTCGACCTGGACACCAACACCATCTTCCAGTCGGACGACAAGAAGCCGTTGTCATGGCGATCGTTACCCAGGAAGCCCGGCAAGACTCTGTTCAACACCCTCACCAACCTCCACAAGACCCTGGAGAAGATTTGCACCCCCGGCCAGGAGGAGGCGACGCTGGAGTTCCTGCTGACGGACTACGACCAGATCTACCGGAGCCAGAAGCAGCTGGAGCTGGAGATCCAGGAGGCCTTCCTCCGCTTCATGAGCTGCCTGCTGCGCGGATACCGAACCTTCCTGCTGCCCATCACCCAGGCGCCATCAGACACCACCACGGACTGCAGCTCCCTGTTCAACCTGCAGGGGTTCCTGAAGTCTCGGGATCGAACGCAGCAGAAGATCTACGGTCAGCTGACCAGGACGCAGATGTTCACTCAGTTCATCGAGGAGTGCTCCTTCGTCAGCGACCGGCACGCCTGCCTCGAGTTCTTTGACGAGTGCGTCCAGAAGGTGGACGTGGAGAAGCCGGAGGAGGTGAGGCTGATCGATCTGGATGAGACTCACAGCGGCGAGCACACCGTCTTCATCATGCCTCCTGAAGAACCGCAGGAAGCGGACGGCTCCGAGTGTCCCGCACTCTACAGTTATGAAACCTTCCCCACCCTGAGGCCGGAGCTCTTTGACCGGCCGCAGGACCAGCTCCGGGTCCCGGCAAAGGGCAGCGCCCCCAGCAGCCCCGCGCCACGCCGCACCAAACAGGAGATCAAGTTGGCCCAGAAGCGAGCTCAGAAGTACTCAGCGGTGCCGGACATGTGGTCCAAGTGCCTGCTGGGTCACTGCTACGGCCTCTGGTTCATCTACCTGCCCACCTTCGTGCGGGCCGAGAGCGCCAAGGTGCGCGCGCTGCACACGGCCTACGACGTCCTCAAACACATGGAGAACCGCAAGGTGGTGCTGCCGGACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105487 lncRNA upstream 22584 36605671 ~ 36606317 (+) True G78850
TU105480 lncRNA upstream 27681 36582192 ~ 36601220 (+) True G78844
TU105481 lncRNA upstream 27681 36600433 ~ 36601220 (+) False G78844
TU105479 lncRNA upstream 28222 36581943 ~ 36600679 (+) True G78843
TU105459 lncRNA upstream 38426 36534793 ~ 36590475 (+) False G78836
TU105445 lncRNA downstream 14804 36684833 ~ 36713725 (+) False G78825
TU105513 lncRNA downstream 22169 36692198 ~ 36694660 (+) False G78865
TU105508 lncRNA downstream 22978 36693007 ~ 36695532 (+) False G78865
TU105509 lncRNA downstream 22978 36693007 ~ 36693602 (+) False G78865
TU105511 lncRNA downstream 22978 36693007 ~ 36697047 (+) True G78865
XM_039807340.1 mRNA upstream 87371 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 178697 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 245805 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 261876 36360700 ~ 36367025 (+) True nat16l
XM_039807329.1 mRNA upstream 438486 36178207 ~ 36190415 (+) True LOC120563177
XM_039806171.1 mRNA downstream 15907 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 90481 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 139531 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 141839 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 146363 36816392 ~ 36829422 (+) True LOC120563178
TU105394 other upstream 163671 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 194676 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 277906 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 487679 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 740729 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 21364 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 256683 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 761142 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 860661 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 860661 37530690 ~ 37533069 (+) True G79007

Expression Profile