RNA id: TU105480


Basic Information

Item Value
RNA id TU105480
length 534
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G78844
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36582192 ~ 36601220 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctctctctctctctgtctctctctctctctctctctctctgtctctctgtctctctctctctctccctctgtctctctctctctctctctctctgtctctctgtctctgtctctctgtctctctgtctctgtctctctgtctctctctgtctctctctctctctctctctctgtctccctctctctctctctctctctctctctctctctctctctctctctctctcttctctctctctctctctgtctctctctcaattcaattcaaggtAACTTTATTAGCATGACTGTAGGTACAGTGTTGCCAAAGCACAAGCAAAACAGCATAACATTTTCTACAGTAACAATTAGAACATTTACAGCCTTAAGGAagacagtaacacacacacaaagaaaaattGCATGTACACATTCCCTTTCTCTTTTTCGTACTCACGCACATAcgcatgtacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105422 lncRNA upstream 74378 36446709 ~ 36507814 (+) True G78813
TU105419 lncRNA upstream 74378 36469256 ~ 36507814 (+) False G78813
TU105392 lncRNA upstream 131982 36449783 ~ 36450210 (+) False LOC120563181
TU105421 lncRNA upstream 134977 36446647 ~ 36447215 (+) False G78813
TU105400 lncRNA upstream 166308 36398049 ~ 36415884 (+) True G78798
TU105487 lncRNA downstream 4451 36605671 ~ 36606317 (+) True G78850
TU105472 lncRNA downstream 11290 36612510 ~ 36629043 (+) False LOC120562456
TU105468 lncRNA downstream 40613 36641833 ~ 36643491 (+) True G78837
TU105466 lncRNA downstream 40937 36642157 ~ 36643491 (+) False G78837
TU105469 lncRNA downstream 40937 36642157 ~ 36643491 (+) False G78837
XM_039807340.1 mRNA upstream 40662 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 131988 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 199096 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 215167 36360700 ~ 36367025 (+) True nat16l
XM_039807330.1 mRNA upstream 391777 36178207 ~ 36190415 (+) False LOC120563177
XM_039806169.1 mRNA downstream 27681 36628901 ~ 36670029 (+) True LOC120562456
XM_039806171.1 mRNA downstream 84716 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 159290 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 208340 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 210648 36811868 ~ 36829422 (+) False LOC120563178
TU105394 other upstream 116962 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 147967 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 231197 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 440970 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 694020 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 90173 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 325492 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 829951 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 929470 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 929470 37530690 ~ 37533069 (+) True G79007

Expression Profile