RNA id: TU105506


Basic Information

Item Value
RNA id TU105506
length 319
lncRNA type intronic
GC content 0.39
exon number 2
gene id G78863
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36666597 ~ 36667363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atagactgatacaagacctatagactgatacaggacctatagactgatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactgatacaggacctatagactaatacaggacctttagactaatacaggacctatagactgatacaggacctatagactaatacaggacctatagactgatacaggacctatagactgatacaggacctatagactgatacaggacctatagactaatacaggacctatagactaatacaagacctatagactaatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105505 lncRNA upstream 8291 36658008 ~ 36658306 (+) True G78862
TU105464 lncRNA upstream 23106 36578832 ~ 36643491 (+) False G78837
TU105468 lncRNA upstream 23106 36641833 ~ 36643491 (+) True G78837
TU105466 lncRNA upstream 23106 36642157 ~ 36643491 (+) False G78837
TU105469 lncRNA upstream 23106 36642157 ~ 36643491 (+) False G78837
TU105445 lncRNA downstream 17470 36684833 ~ 36713725 (+) False G78825
TU105513 lncRNA downstream 24835 36692198 ~ 36694660 (+) False G78865
TU105508 lncRNA downstream 25644 36693007 ~ 36695532 (+) False G78865
TU105509 lncRNA downstream 25644 36693007 ~ 36693602 (+) False G78865
TU105511 lncRNA downstream 25644 36693007 ~ 36697047 (+) True G78865
XM_039807340.1 mRNA upstream 125067 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 216393 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 283501 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 299572 36360700 ~ 36367025 (+) True nat16l
XM_039807330.1 mRNA upstream 476182 36178207 ~ 36190415 (+) False LOC120563177
XM_039806171.1 mRNA downstream 18573 36685936 ~ 36703993 (+) False LOC120562457
XM_039806172.1 mRNA downstream 93147 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 142197 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 144505 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 149029 36816392 ~ 36829422 (+) True LOC120563178
TU105394 other upstream 201367 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 232372 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 315602 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 525375 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 778425 35865842 ~ 35888172 (+) False LOC120562279
TU105437 other downstream 24030 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 259349 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 763808 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 863327 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 863327 37530690 ~ 37533069 (+) True G79007

Expression Profile