RNA id: TU105509


Basic Information

Item Value
RNA id TU105509
length 309
lncRNA type intronic
GC content 0.40
exon number 2
gene id G78865
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36692198 ~ 36698972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcacgcactaataagacaacacgcactaataagacaacacgcactaataataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataaaccacagcacgcactaataagacaacatgcactaataagacaacacgtgcaaataaaccacagcacgcaacaacagcacgcaacaataagacagcacgcactaataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105506 lncRNA upstream 25644 36666597 ~ 36667363 (+) True G78863
TU105505 lncRNA upstream 34701 36658008 ~ 36658306 (+) True G78862
TU105464 lncRNA upstream 49516 36578832 ~ 36643491 (+) False G78837
TU105468 lncRNA upstream 49516 36641833 ~ 36643491 (+) True G78837
TU105466 lncRNA upstream 49516 36642157 ~ 36643491 (+) False G78837
TU105516 lncRNA downstream 501 36694103 ~ 36696479 (+) False G78866
TU105519 lncRNA downstream 2040 36695642 ~ 36698507 (+) True G78866
TU105514 lncRNA downstream 3181 36696783 ~ 36698972 (+) False G78865
TU105444 lncRNA downstream 17498 36711100 ~ 36720480 (+) True G78825
TU105524 lncRNA downstream 58489 36752091 ~ 36774512 (+) True G78870
XM_039806169.1 mRNA upstream 22978 36628901 ~ 36670029 (+) True LOC120562456
XM_039807340.1 mRNA upstream 151477 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 242803 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 309911 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 325982 36360700 ~ 36367025 (+) True nat16l
XM_039806172.1 mRNA downstream 66908 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 115958 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 118266 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 122790 36816392 ~ 36829422 (+) True LOC120563178
XM_039805847.1 mRNA downstream 161817 36855419 ~ 36869334 (+) True aldh5a1
TU105394 other upstream 227777 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 258782 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 342012 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 551785 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 804835 35865842 ~ 35888172 (+) False LOC120562279
TU105558 other downstream 233110 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 737569 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 837088 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 837088 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 1185362 37878964 ~ 37883950 (+) False cmtm7

Expression Profile