RNA id: TU105516


Basic Information

Item Value
RNA id TU105516
length 374
lncRNA type intronic
GC content 0.40
exon number 2
gene id G78866
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36694103 ~ 36698507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaaataaaccacagcacgcactaataagacaacacgtgcaaataaaccacagcacgcactaataagacaacacgcactaataagacaacacgtgcaaataaaccacagcacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacatgcactaataagacaacacgcactaataagacaacacgcaaataaaaccacagcacgcaacaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105509 lncRNA upstream 501 36693007 ~ 36693602 (+) False G78865
TU105506 lncRNA upstream 26740 36666597 ~ 36667363 (+) True G78863
TU105505 lncRNA upstream 35797 36658008 ~ 36658306 (+) True G78862
TU105464 lncRNA upstream 50612 36578832 ~ 36643491 (+) False G78837
TU105468 lncRNA upstream 50612 36641833 ~ 36643491 (+) True G78837
TU105514 lncRNA downstream 304 36696783 ~ 36698972 (+) False G78865
TU105444 lncRNA downstream 14621 36711100 ~ 36720480 (+) True G78825
TU105524 lncRNA downstream 55612 36752091 ~ 36774512 (+) True G78870
TU105525 lncRNA downstream 55612 36752091 ~ 36794092 (+) False G78870
TU105527 lncRNA downstream 56636 36753115 ~ 36758299 (+) True G78871
XM_039806169.1 mRNA upstream 24074 36628901 ~ 36670029 (+) True LOC120562456
XM_039807340.1 mRNA upstream 152573 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 243899 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 311007 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 327078 36360700 ~ 36367025 (+) True nat16l
XM_039806172.1 mRNA downstream 64031 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 113081 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 115389 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 119913 36816392 ~ 36829422 (+) True LOC120563178
XM_039805847.1 mRNA downstream 158940 36855419 ~ 36869334 (+) True aldh5a1
TU105394 other upstream 228873 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 259878 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 343108 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 552881 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 805931 35865842 ~ 35888172 (+) False LOC120562279
TU105558 other downstream 230233 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 734692 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 834211 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 834211 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 1182485 37878964 ~ 37883950 (+) False cmtm7

Expression Profile