RNA id: TU105519


Basic Information

Item Value
RNA id TU105519
length 627
lncRNA type intronic
GC content 0.37
exon number 3
gene id G78866
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36694103 ~ 36698507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaataagacaacacgcactaataagacaacacgcacaaataaaccacagcacgcactaataagacaacacgcgctaataagacaacacgtgcaaataaaccacagcacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacatgcactaataataagacaacacgcactaataagacaacatgcactaataataagacaacacgcactaataagacaacacgcactaataataagacaacacgcactaataagacaacacgcactaataataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataagacaacacgcaccactaataagacaacacgcactaataagacaacaagcaataataagacaacacgcactaataagacaacacgcactaataataagacaacacgcactaataataagacaacacgcactaataataagacaacacgcactaataagacaacacgcactaataagacaacacgcactaataataagacaacacgcaataataagacaacacgcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105508 lncRNA upstream 110 36693007 ~ 36695532 (+) False G78865
TU105513 lncRNA upstream 982 36692198 ~ 36694660 (+) False G78865
TU105509 lncRNA upstream 2040 36693007 ~ 36693602 (+) False G78865
TU105506 lncRNA upstream 28279 36666597 ~ 36667363 (+) True G78863
TU105505 lncRNA upstream 37336 36658008 ~ 36658306 (+) True G78862
TU105444 lncRNA downstream 12593 36711100 ~ 36720480 (+) True G78825
TU105524 lncRNA downstream 53584 36752091 ~ 36774512 (+) True G78870
TU105525 lncRNA downstream 53584 36752091 ~ 36794092 (+) False G78870
TU105527 lncRNA downstream 54608 36753115 ~ 36758299 (+) True G78871
TU105529 lncRNA downstream 54608 36753115 ~ 36907622 (+) False G78871
XM_039806169.1 mRNA upstream 25613 36628901 ~ 36670029 (+) True LOC120562456
XM_039807340.1 mRNA upstream 154112 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 245438 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 312546 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 328617 36360700 ~ 36367025 (+) True nat16l
XM_039806172.1 mRNA downstream 62003 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 111053 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 113361 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 117885 36816392 ~ 36829422 (+) True LOC120563178
XM_039805847.1 mRNA downstream 156912 36855419 ~ 36869334 (+) True aldh5a1
TU105394 other upstream 230412 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 261417 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 344647 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 554420 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 807470 35865842 ~ 35888172 (+) False LOC120562279
TU105558 other downstream 228205 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 732664 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 832183 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 832183 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 1180457 37878964 ~ 37883950 (+) False cmtm7

Expression Profile