RNA id: TU105527


Basic Information

Item Value
RNA id TU105527
length 3776
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G78871
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36753115 ~ 36907622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcccagctgctgctaacgctgctaacgggtgtcgtagcttcccggcccctgtggcaagtttgaagaaggaaacatgggaGGACCAACGCGTATTAGAAATTCCAAATTTCAaggaacagaaaaagaaaagagcgagagaccggctttttgaaccgtggaggctaccgtagctgtagtACGTACTCTGAACTGCGTGGTGAGGGAGAGCCGATTGAGATaaatgatctcaacgctagattgGGAGAAACtcttacacactggacctttaacttATCTTTTTGATTCACACTTTCCTCTTTCATCTGCTGTTCTCATTCTTAATATATAGAATTTAAAGGGACAGTTTACCTTGCTGTCGTTCTACCTctacctttctttttttttttaaccgaaaCAGTAGTGCATTGAACACCCTGGTGTGTGCGCGCAAGTGCTCTTCCTTTTTAAATCAATCATTCTAGTGCGATCCATTTGTACTCGCAAGTCAGACAACCTTCGATTAACCAAGTTCACAATCCAGCCAggctgctccgtgcatcaacagAAGTTAAAGCTGTAGGAACATACAGTTTatcagcacttctgtcttaGTTGTGTCTCACgaaatcagtcgtacacacagtcctgtcctgtcctatcGTCTATCTGTGGTCATGTTGCTAGGACACTATCTTGCACTCGGCGCAACGCAACGCAACgcaacgcaagtgtctttgctagtttagcaaatgcacctgcgcccatctgtgcgcccatctgtgcgcccatctgtgcgcctgctcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctgatcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtattgctatcttgaggcagcaggaagtgatggtagcctcgtgagagcgtcctgatctggcgagctccagttttccactcgcagatcagtctggcatcttgagatagagaacatttggagccgctcgccaaacgaccgaccaatcagcgttggttttgaggcgggtttaggtggttttatccaatcagctaaccaggattttcagacagcggaccaggaacctgaaatggggccttttattcctaaattctcgttacacaaagagcaaatctcctttaccgacatgctgcgtgcttgctgagctaacgagctaacgagctatgctttaactgcagcagcagcaggggtagcctggcttgtggttgtattttttaatacgcttcgtggatctgattggttgatttggcccagtctatcaccaacataggtgatagactgatggtttatccaatcagctaaccagtagtttcgccccttcccaaaagttctccaacggaaagttcccagaatggatatgccgagcaaatgcgaagcgatccatctggcggagtcaggttaaagtgatcgcgccattgaccgacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacagagcgttagtaaaatgctcctaggctcgtgcacagcgcgcacacactatgcttgttacacacacagcagcacacacacacacagaaggttACAAATAAAAACgttagggtgtaaatcctccatcataacagcaatgctccaaggtccaaacacgCCTGtatttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaaggacaaccctttaggaccaggcgcccggcgcacagacACTTTTAAACcaccgttaaactagcaaaagcggatttggacacgccctaaacacacctgctcctttagatcgttaaaatagggccctatgagTCATTTTCAGATCTGACCTGACCAAACAAAAGGTAAACTTCTTATTATTATCCGACCAAAGCCGAGCATCCTACACATTTCGAGACTTTAGTGGCGTTCTGGGAGACTCTTGtttggtcgtttttttttttttaattctgatTTGAAGAATGATTCCAGTGTCTAAAAACGTTAGCGGGCCACCGTGATGAACCCAGTTCAGAAACCTTTTAAACTATGCTGTAGCTTCGTGTTCAAACTGCCCGGCAGCCTTTGCCCCTCTGGAAGAACCCCCAAACGAACGAAAGAGCTCAAGTTTTCTAAGTTTTCCTCGAGCGTTGAATGATGGATGGCTTTCGcacattttattacttttataaaacaaaaacagagagagagagagagagattgggaGAGATCCAACATGTTCCAACTCTCAGTGGCTTCACGTTTCAGGGAGTTTGAAAAGTCTCAGCTTTTCTCGTTTGGAGATTTCCTCGACAGACGTACCGAGAGACCATCAGAAGTCTCCTGGAGTTTGAAGTCTTCTTGAAGTCTGCCCTGCGTTTCCAATCCTTTATTCGACcctatttttcaaaataaaatcctaaCTGTCGTCCTTGGTCACACCGGTAAAGATAGATCTGACATCGTACAACTCTCCCACTCTCAGTCCGCTGCAAGACTTCCCTTTGCTCCGAATtaaaaaaggtgcagtaggtaagactttatcaaactacctttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtcatgaAGCatcacctacagcctgtagtgtgaaaatcgctgttcagatgcaccaatcagggccagggggaggtgtctaactgtttagatgcaccaatcagggccaggggttgggggtgtctaactgtttagatgcaccaatcagggccagggggtgggggtgtctaactgttcagatgcaccaatcagggccagggagggtgtctaactgttaagatgcaccaatcagggccagggagggtgtctaactgtttagatgcaccaatcagggccagggagaggtgtctaactgttaagatgcaccaatcagggccaggggagtgtctaactgttaagatgcaccaatcagggccagggggagtgtataactgcgtgtcaatcactgctcatgcacacgcattcattctccattgtggggggaggggcttaggagacagttttgggctttagccaaaagggggggagggaaggATTTAGAAGTTGTCGATTGTTATATTTTTggggctaagtcctggatcttcccagtcctacctacagcaccttgaACCCATCTGGATgtccattttcttttatttctttttaaaaacagggggaaactgaaatatcacaccGACACAGCCGATCCCTCCGGACATGCACGGACCCACCAAAGGCCTGCGCCGGTTTTTCCTGCCTTCACCCATTCGTCGGCTCAGTACGTTCCTTGTGCGAGCTCTTCGGGTTGCCGGATCGTCTCCGAGCCGACATCCAACTTTTCTTTCCCCGGGTGTTAAATGAAGACAAAGAGACGCTGGACTAACACAGAGCTACGGAGGACAGGAAGGAAGCGCACGTCACTCCGACTTCCAGCAGCGAGGGGAAGGATACAAGCGTGCGAAGGGCAGCAGggatcctcctcttcctccctcacaggtggtggtggtggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105444 lncRNA upstream 32635 36711100 ~ 36720480 (+) True G78825
TU105514 lncRNA upstream 54143 36696783 ~ 36698972 (+) False G78865
TU105519 lncRNA upstream 54608 36695642 ~ 36698507 (+) True G78866
TU105511 lncRNA upstream 56068 36693007 ~ 36697047 (+) True G78865
TU105546 lncRNA downstream 54416 36812715 ~ 36815976 (+) True G78882
TU105556 lncRNA downstream 80923 36839222 ~ 36928871 (+) False G78888
TU105562 lncRNA downstream 151716 36910015 ~ 36939954 (+) False G78888
TU105591 lncRNA downstream 155469 36913768 ~ 36980636 (+) True G78907
TU105557 lncRNA downstream 168413 36926712 ~ 36938438 (+) False G78888
XM_039806171.1 mRNA upstream 49122 36685936 ~ 36703993 (+) False LOC120562457
XM_039806169.1 mRNA upstream 83086 36628901 ~ 36670029 (+) True LOC120562456
XM_039807340.1 mRNA upstream 211585 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 302911 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 370019 36368694 ~ 36383096 (+) True LOC120563182
XM_039806172.1 mRNA downstream 2211 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 51261 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 53569 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 58093 36816392 ~ 36829422 (+) True LOC120563178
XM_039805847.1 mRNA downstream 97120 36855419 ~ 36869334 (+) True aldh5a1
TU105437 other upstream 49250 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 287885 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 318890 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 402120 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 611893 36137759 ~ 36141222 (+) False G78759
TU105558 other downstream 168413 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 672872 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 772391 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 772391 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 1120665 37878964 ~ 37883950 (+) False cmtm7

Expression Profile