RNA id: TU105558


Basic Information

Item Value
RNA id TU105558
length 2068
RNA type TUCP
GC content 0.44
exon number 2
gene id G78888
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36839222 ~ 36939954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAAAttctttattgtttgttttttacatcaAGCACCATTGTTCGGTTTCATAAACCCCAGTCACGGATTTCCaggtacagacagacagacagacagacgatgACACCGACTGAGCAGTGAGACACGTTTAGGACCCTTTGACCCTTTTATGACCGTTCTGCAGTTTAGTTTGATCCTTTCCAGAGTCCAAAGTTTGGTCCGTCAGTTGAAATAATATTTTCTTCAGCAGCTTGTTGTTCAGATGTGAGGGGGCTGCAGCCAAACAGGGGGGGCTCTGAGGCCAGCCCCCCTCTTCCTAGGAATTTGGGGAGTTTAGTTACTTACCGGTAATGGGAGTTAATGTTCTAGAGTAGGGGTTGACCGATACTGGAACcaatgtgcatttacagtaaaaaaaatatcaaaatcttttggaatgttacaaattCCCAACACAAGTAGCAATGCCACAGTGTCAAAATACTCGTGATACGAGTatatgttttgctttttttttttaatactaaaTGTAACTAAACAAAATGtccatttcaaaataatatataGAACTACTGAAGTGTTGAGTGAAAGCgaagcagagggagagacacagagctgtagcacacttttgatttttttttaactttatcgGTTTTATGGTCAAATAAAACCCCGATACAGATAATGTGCAGATTGCCAGATATCGTCCCTGATAAGCGAGCAGGCCGATGAGGGCCGGGTCCCTGGTTTGTGCTggtctgacctgctgccctccAGCTGGAGCGTCTCGTCTGCCCAACAGGCTGAGTAACTCACCCTGACCACCATGACTCCAACTCTACGGTAGGAGcttcctgtgtctctgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtctctgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgtgcgtgtgtgtctctgtctgtgtgtctgtatgtgtgtgtgtctgtttctgtgtctgtgtgtgtctctgtgtatctgtgtctctctctgtatgtgtctgtgtgtgtgtgtgtgtctctgtgtgtgtatgtctctgtgtgtctatgtgtgtgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgcgtgtgtctctctgtctgtatgtgtgtgtgtgtgtgtctctctctgtgtgtctgtaactgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgtgtctctctgtatctgtgtgtgtgtgtgtatgtgtgacgtCTAGAAAAACAAGCTGGAGCTGATGATCATGAAATAACACTTTCAAATCTATCATTAACACTTAAAACAAATACGGAGAGAATTTAAATCCTAAGATTacaagataataataataataataataagggtTCTGCAActttctttcagcagcgggATGGAAAAACAGCCGCATGCGAGTCCAAATCAAACATTTCTGATCAGTTatggaaaaacattttaatgttgaTGTGATTCCTTCAAACATTCATTCATAATCCGCCTCCGCTGGCTCCAGGGACATAGCACCTGATGTGTAGAAAAAGTCATCTGTGAAGGAGCTTTAAACACTCAACACACAATCAGGACCTCACATTCAAGAGTTTTCTATTGCAAAATGGTgaaggtttaaaaaataaaaataaaaagagagctCTGAGATAAGAAAGAACAACTTTTCCTGAAGGCGTTTTTAAAAACCTAAATTTAATTAGCAGTTTAAATGTCCCAGAATACCCTCAGCTGTGAATGAATTCATAAAGTCTCTTTGGTGTTTTCCCTGGaagatgcatgtgtgtgtatgtatgttttttcttttttttgggttgTACGGTGGTGATCCGGAGGCGTCCCCTCCTCATCGGCTCTTGGTCAGACAGAGGCTCTCGCACTCGTCTTGCGTCTTGAAGCGGTTTCCGTTGCCGCCGCAGCCGCCGTACCAGAAGCGAGAGCATTCCCTCTGCTCGGTGTCGAAGAACCACATCATGGTGTAGTTCTGGCAGCCGCCCTGGTCCTGGCTGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105529 lncRNA upstream 19090 36753115 ~ 36907622 (+) False G78871
TU105546 lncRNA upstream 110736 36812715 ~ 36815976 (+) True G78882
TU105525 lncRNA upstream 132620 36752091 ~ 36794092 (+) False G78870
TU105524 lncRNA upstream 152200 36752091 ~ 36774512 (+) True G78870
TU105527 lncRNA upstream 168413 36753115 ~ 36758299 (+) True G78871
TU105565 lncRNA downstream 74712 37003583 ~ 37005020 (+) False G78889
TU105563 lncRNA downstream 75733 37004604 ~ 37048033 (+) True G78889
TU105605 lncRNA downstream 80563 37009434 ~ 37010480 (+) True G78921
TU105607 lncRNA downstream 90333 37019204 ~ 37020468 (+) True G78922
TU105612 lncRNA downstream 112820 37041691 ~ 37089414 (+) True G78925
XM_039806174.1 mRNA upstream 1885 36895389 ~ 36924827 (+) True pik3r4
XM_039805847.1 mRNA upstream 57378 36855419 ~ 36869334 (+) True aldh5a1
XM_039805848.1 mRNA upstream 57378 36855699 ~ 36869334 (+) False aldh5a1
XM_039807332.1 mRNA upstream 97290 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA upstream 97290 36811868 ~ 36829422 (+) False LOC120563178
XM_039806544.1 mRNA downstream 396030 37324901 ~ 37326438 (+) True LOC120562694
XM_039805211.1 mRNA downstream 407200 37336071 ~ 37351571 (+) True LOC120561884
XM_039805209.1 mRNA downstream 426112 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA downstream 427446 37356317 ~ 37359625 (+) False LOC120561883
XM_039805208.1 mRNA downstream 427446 37356317 ~ 37359625 (+) False LOC120561883
TU105437 other upstream 222847 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 461482 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 492487 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 575717 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 785490 36137759 ~ 36141222 (+) False G78759
TU105685 other downstream 502300 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 601819 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 601819 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 950093 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 1127545 38056416 ~ 38077649 (+) False nek11

Expression Profile