RNA id: TU105591


Basic Information

Item Value
RNA id TU105591
length 557
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G78907
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36913768 ~ 36980636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctagcttagcacagatcctggaggtaaccggctccatctagcctactgctcccaataagtgacaaaataacaccaacatgttcctatttacatgttgtgatttctatagtcacagcgtgtacaaataacaaggtcacatgacacacagccatcttctaaccgtatacacaCTGGATGTTTACGGTAGTATAGTGATTAGTAGTGatagtgatttgctcgcaggaAGCTGAGATGCCCcatggtgaggagcagagagtaacaacggtgcttttcaggtgttgcactaatcactccgcccaagtagcagaagtagcagaagtagcagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105529 lncRNA upstream 6146 36753115 ~ 36907622 (+) False G78871
TU105546 lncRNA upstream 97792 36812715 ~ 36815976 (+) True G78882
TU105525 lncRNA upstream 119676 36752091 ~ 36794092 (+) False G78870
TU105524 lncRNA upstream 139256 36752091 ~ 36774512 (+) True G78870
TU105527 lncRNA upstream 155469 36753115 ~ 36758299 (+) True G78871
TU105565 lncRNA downstream 22947 37003583 ~ 37005020 (+) False G78889
TU105563 lncRNA downstream 23968 37004604 ~ 37048033 (+) True G78889
TU105605 lncRNA downstream 28798 37009434 ~ 37010480 (+) True G78921
TU105607 lncRNA downstream 38568 37019204 ~ 37020468 (+) True G78922
TU105612 lncRNA downstream 61055 37041691 ~ 37089414 (+) True G78925
XM_039805847.1 mRNA upstream 44434 36855419 ~ 36869334 (+) True aldh5a1
XM_039805848.1 mRNA upstream 44434 36855699 ~ 36869334 (+) False aldh5a1
XM_039807332.1 mRNA upstream 84346 36809560 ~ 36829422 (+) False LOC120563178
XM_039806544.1 mRNA downstream 344265 37324901 ~ 37326438 (+) True LOC120562694
XM_039805211.1 mRNA downstream 355435 37336071 ~ 37351571 (+) True LOC120561884
XM_039805209.1 mRNA downstream 374347 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA downstream 375681 37356317 ~ 37359625 (+) False LOC120561883
XM_039805208.1 mRNA downstream 375681 37356317 ~ 37359625 (+) False LOC120561883
TU105437 other upstream 209903 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 448538 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 479543 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 562773 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 772546 36137759 ~ 36141222 (+) False G78759
TU105685 other downstream 450535 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 550054 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 550054 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 898328 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 1075780 38056416 ~ 38077649 (+) False nek11

Expression Profile