RNA id: TU105638


Basic Information

Item Value
RNA id TU105638
length 229
lncRNA type inter_gene
GC content 0.65
exon number 5
gene id G78947
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37201191 ~ 37206248 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGGTCTCCTCTCGGTCCTTTAGCTCCATCTGTTCCCGTCAGTCCCTGCTCTCCGTCGATTCCGCCCAGTCCGTTTTCTCCGTTCTCCCCCCTGTTGCCCGAGACTCCTCTGTAGCCCTTTTGTCCTCTGATTCCGGGACAGCCCTCGATGCCCGGCGGTCCGAAGGGTCCAGGTGGCCCTCGCTCACCAGGAGCTCCCTCGTCTCCCGGGAAACCCGGCTGGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105612 lncRNA upstream 111777 37041691 ~ 37089414 (+) True G78925
TU105563 lncRNA upstream 153158 37004604 ~ 37048033 (+) True G78889
TU105607 lncRNA upstream 180723 37019204 ~ 37020468 (+) True G78922
TU105605 lncRNA upstream 190711 37009434 ~ 37010480 (+) True G78921
TU105565 lncRNA upstream 196171 37003583 ~ 37005020 (+) False G78889
TU105654 lncRNA downstream 89318 37295566 ~ 37379314 (+) True G78961
TU105689 lncRNA downstream 227098 37433346 ~ 37467880 (+) True G78990
TU105698 lncRNA downstream 286558 37492806 ~ 37494603 (+) True G78998
TU105699 lncRNA downstream 293642 37499890 ~ 37500110 (+) True G78999
TU105705 lncRNA downstream 319628 37525876 ~ 37530597 (+) True G79004
XM_039806174.1 mRNA upstream 276364 36895389 ~ 36924827 (+) True pik3r4
XM_039805847.1 mRNA upstream 331857 36855419 ~ 36869334 (+) True aldh5a1
XM_039805848.1 mRNA upstream 331857 36855699 ~ 36869334 (+) False aldh5a1
XM_039807334.1 mRNA upstream 371769 36811868 ~ 36829422 (+) False LOC120563178
XM_039806544.1 mRNA downstream 118653 37324901 ~ 37326438 (+) True LOC120562694
XM_039805211.1 mRNA downstream 129823 37336071 ~ 37351571 (+) True LOC120561884
XM_039805209.1 mRNA downstream 148735 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA downstream 150069 37356317 ~ 37359625 (+) False LOC120561883
XM_039805208.1 mRNA downstream 150069 37356317 ~ 37359625 (+) False LOC120561883
TU105558 other upstream 272320 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 497326 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 735961 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 766966 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 850196 36293987 ~ 36350995 (+) True G78772
TU105685 other downstream 224923 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 324442 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 324442 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 672716 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 850168 38056416 ~ 38077649 (+) False nek11

Expression Profile