RNA id: TU105685


Basic Information

Item Value
RNA id TU105685
length 1509
RNA type TUCP
GC content 0.44
exon number 1
gene id G78989
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37431171 ~ 37432679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaggttgctTTTTTGTCATTGTTGTTGTGTTAAATCTTACCCAGTACAatagtgctattttctgattggctattgtgtagcccctttctttgttttgattggctgataagtggcaggctTGGCTAAGACCTCCCGAGGAGACGCGCTTCATTcctgccggttccatagtgagagTGGCGGCCAGAGAAATGTTGGGCGCTGCGgcatattaaatattttaaaaatagtttttccGTGTGACAAATGCAATGAGTGACTGTCACACTCGAtgcgtgacacttgagagccctgcagTGTAAACATGACAACATGGCAACCATCATCATGAGAAGCCGATGGAAATGGATTGGACATGTAATACGAAGAGAGCAAGAAAACATCACGCGAACTGCCCTTCACTGGACACCAGACGGCAAACGTAAAAGAGGTCGACCCAAGAACACCTGGGGCGGGACTGGTGGAGGGAGAGCTGAAGACCCTACATCACACCTGGGGCTATATAAAGACACCGGCCCAAAACAGACAAGAGTGGAAATCTTTTGTTGCTGCCCTACATGCCAACAGGCACAATGgacagtaagtaagtaataagACCAAgctcgagtactacaacactgctgtCAGGTTTGGCCTTTATTATCTGTTCAGCAGAGAGGAAATAAAATGTTACAGAACAAACTGATGTCTGTATGTAAGAGCATGGAGCCCTCTGGTGGAATAAAAAGCCCAACACACCTTCTGTGAAGTTCCCCCTTTGTTATCTGTTCACCACAGAGGAAAGAACCTGCAACTTTAAGCTCatgaaaagcagaaattaaTTTTTACTGATTCATCATTCGAATAGATCCCCAGTGACAATTATCTATTGACAGAtgtcgtgtttttttttaatgtaccaTCTTAAATCCTtaatttaatgaaatgtttctGTGTAAATGTAATATTCTGAACACCCATGTGCCTCCTTGGGATTACCCTGGTAACTCTGTTTTAACGTTACAACGCTGTGAATTGTGGGTAACTCCCTCAGGAAAAGTCAGCAGAAATGTGGAGTTGCAGAAAGTGGTCAGAAAGGGCTCGAAATGTCAGCGAGAGAGCCATCATGTACCCGATGATTTGCCAGTGGGACAGCCCGAAGGCCTGACAGACGTAACAGCAAAGCACCTCaaagtctgtgagtgtgtgcgtgtggacATCGAGATTTGGGATAAACATCAGAACGTAAAGTTAGAGACTAAAGTCTATAGTCGACGCTCTCAGGGAGAAATCTCCGACATGTCAGCTGTGGTTTTAGATTGGGTCTGGGGGAAGTGAACAGGGAGCCAGGCGACTACAAAGCCCTCATGACTGCTTCCCTAcatctcccagaatgcatttcGACATCTCTGAAAGATTCTTGCTGCTTTCCAAATCTCGTACTTTTTCTTATTTACTTTTAGTACGTATCTGCACCTTGCAAAACATGTACTGTAA

Function

GO:

id name namespace
GO:0008201 heparin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105654 lncRNA upstream 51857 37295566 ~ 37379314 (+) True G78961
TU105638 lncRNA upstream 224923 37201191 ~ 37206248 (+) True G78947
TU105612 lncRNA upstream 341757 37041691 ~ 37089414 (+) True G78925
TU105563 lncRNA upstream 383138 37004604 ~ 37048033 (+) True G78889
TU105607 lncRNA upstream 410703 37019204 ~ 37020468 (+) True G78922
TU105689 lncRNA downstream 667 37433346 ~ 37467880 (+) True G78990
TU105698 lncRNA downstream 60127 37492806 ~ 37494603 (+) True G78998
TU105699 lncRNA downstream 67211 37499890 ~ 37500110 (+) True G78999
TU105705 lncRNA downstream 93197 37525876 ~ 37530597 (+) True G79004
TU105708 lncRNA downstream 98011 37530690 ~ 37533069 (+) False G79007
XM_039805212.1 mRNA upstream 6351 37404963 ~ 37424820 (+) True tmem116
XM_039805207.1 mRNA upstream 39179 37387117 ~ 37391992 (+) True LOC120561882
XM_039806177.1 mRNA upstream 53387 37362224 ~ 37377784 (+) True LOC120562463
XM_039805209.1 mRNA upstream 71546 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA upstream 71546 37356317 ~ 37359625 (+) False LOC120561883
XM_039804868.1 mRNA downstream 133077 37565756 ~ 37568029 (+) True LOC120561682
XM_039806782.1 mRNA downstream 144800 37577479 ~ 37578431 (+) True LOC120562860
XM_039806179.1 mRNA downstream 145918 37578597 ~ 37579855 (+) True LOC120562465
XM_039804927.1 mRNA downstream 150444 37583123 ~ 37586138 (+) True LOC120561715
XM_039806183.1 mRNA downstream 273426 37706105 ~ 37709961 (+) True LOC120562469
TU105558 other upstream 502300 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 727306 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 965941 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 996946 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 1080176 36293987 ~ 36350995 (+) True G78772
TU105717 other downstream 98011 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 98011 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 446285 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 623737 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 655297 38087976 ~ 38145778 (+) False nek11

Expression Profile