RNA id: TU105699


Basic Information

Item Value
RNA id TU105699
length 221
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G78999
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37499890 ~ 37500110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCCGAACAGGCTGCCCAGGGTGAAGACGTCACAGCAGAGGATGAGCACGCTGGTCAGACAGAACTGAAGAGGAGGATTGTGGGACGTCAGCAGCGACGCCGCTGCTCCCGACACACTGAACGCCGTCACAGCGAACACACTCAGCGCCAGGTGTTTACCGCTGACGGCAGGATGACCCACCGGCACAGTCCGGGCGCTCCACGCCACGAAACACCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105698 lncRNA upstream 5287 37492806 ~ 37494603 (+) True G78998
TU105689 lncRNA upstream 32010 37433346 ~ 37467880 (+) True G78990
TU105654 lncRNA upstream 120576 37295566 ~ 37379314 (+) True G78961
TU105638 lncRNA upstream 293642 37201191 ~ 37206248 (+) True G78947
TU105612 lncRNA upstream 410476 37041691 ~ 37089414 (+) True G78925
TU105705 lncRNA downstream 25766 37525876 ~ 37530597 (+) True G79004
TU105708 lncRNA downstream 30580 37530690 ~ 37533069 (+) False G79007
TU105710 lncRNA downstream 30580 37530690 ~ 37533069 (+) False G79007
TU105713 lncRNA downstream 30580 37530690 ~ 37533126 (+) False G79007
TU105714 lncRNA downstream 30580 37530690 ~ 37533069 (+) False G79007
XM_039805212.1 mRNA upstream 75070 37404963 ~ 37424820 (+) True tmem116
XM_039805207.1 mRNA upstream 107898 37387117 ~ 37391992 (+) True LOC120561882
XM_039806177.1 mRNA upstream 122106 37362224 ~ 37377784 (+) True LOC120562463
XM_039805210.1 mRNA upstream 140265 37356317 ~ 37359625 (+) False LOC120561883
XM_039804868.1 mRNA downstream 65646 37565756 ~ 37568029 (+) True LOC120561682
XM_039806782.1 mRNA downstream 77369 37577479 ~ 37578431 (+) True LOC120562860
XM_039806179.1 mRNA downstream 78487 37578597 ~ 37579855 (+) True LOC120562465
XM_039804927.1 mRNA downstream 83013 37583123 ~ 37586138 (+) True LOC120561715
XM_039806183.1 mRNA downstream 205995 37706105 ~ 37709961 (+) True LOC120562469
TU105685 other upstream 67211 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 571019 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 796025 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 1034660 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 1065665 36392252 ~ 36434225 (+) False LOC120563181
TU105717 other downstream 30580 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 30580 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 378854 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 556306 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 587866 38087976 ~ 38145778 (+) False nek11

Expression Profile