RNA id: TU105711


Basic Information

Item Value
RNA id TU105711
length 1080
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G79007
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37530690 ~ 37550602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtctgtgttgtcatgtgtgattgtgtgtgtgttgtcatgtgtgattgtgtgtgtgttgtcatgtgtgattgtgtgtgtgttgtcatgtgtgattgtgtgtgtgttgtcatgtgtgattgtgtgtgtgtgtgtgtgttgtcatgtgtgattgtgtgtgttgtcatgtgtgattgtgtgtgtgattgttgtcatgtgtgattgtgtgtgtgtgtgtgtgtgtgtgttgtcatgtgtgattgtgtctgtgttgtcatgtgtgattgtgtgtgtgttgtcatgtgtgattgtgtgtgtgttgtcgtgtgtgtgtgtgtgtgtgtgtctgtgttgtctcgtgtgtgtgtgcgtgtgattgtgtgtctgtgtgttgtcaagtgtgattgtgtgtgtatatttgtgcgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgttgtgttttcatgAAAAAGGACCCAGACCGATAATCGAATGTCTTAAACAGAGATTAATTTAGTTTAATGATCTCGGCGTCTGCCGGCGCCGCTGGCGGCGTGGCCGATGCGTCCGTCGCCTCGTGTAGCTTCATGTGGTTGCGGAAGGTCCTGGGTTTGCTCAGGTTCTTCTTGCAGATGTTGCAGAAGTACGGCCGGGCGTTCGAGTGCCTGCTGTCCATGTGGTAGGTGAGCTCCAGGGTGCGGCTGAAGCTCTTGCCGCACAGCGGACACGGGAACCGGACGCCCGAGTGCGTCAGCTGGTGGCACTTGAGCACGCTCTGCTGCTTGAAGGTCTTCTGGCAGATGGTGCACTGGTACGGCCGGGCGTCGGCGTGCAGCCGCTGGTGGCGCCGCAGCGCGCTGGAGAAGGCGAAGCTCCGGTTGCACTGGGCGCAGGTGTAGGGCTTCTCGCCCGTGTGGGTCCTCTGGTGCTCCCTCATGTGCGCCTGCTGGATGAAGCTCTTCCGGCAGATGGGGCACTGGAACGGGCGCTCGCCCGAGTGGATCCTCAGGTGTTTCTGCAGCGCCGACGCCTTGAAGCAGTCGCGGCCGCACACGGGACAGCAGTGCTTACTTTTCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105705 lncRNA upstream 411 37525876 ~ 37530597 (+) True G79004
TU105699 lncRNA upstream 30898 37499890 ~ 37500110 (+) True G78999
TU105698 lncRNA upstream 36405 37492806 ~ 37494603 (+) True G78998
TU105689 lncRNA upstream 63128 37433346 ~ 37467880 (+) True G78990
TU105654 lncRNA upstream 151694 37295566 ~ 37379314 (+) True G78961
TU105725 lncRNA downstream 9836 37542905 ~ 37543545 (+) True G79011
XR_005639871.1 lncRNA downstream 23606 37556675 ~ 37560786 (+) True LOC120562911
TU106101 lncRNA downstream 74116 37607185 ~ 37645567 (+) True G79262
TU106131 lncRNA downstream 200139 37733208 ~ 37733727 (+) False G79284
TU106141 lncRNA downstream 200139 37733208 ~ 37748007 (+) False G79284
XM_039805212.1 mRNA upstream 106188 37404963 ~ 37424820 (+) True tmem116
XM_039805207.1 mRNA upstream 139016 37387117 ~ 37391992 (+) True LOC120561882
XM_039806177.1 mRNA upstream 153224 37362224 ~ 37377784 (+) True LOC120562463
XM_039805210.1 mRNA upstream 171383 37356317 ~ 37359625 (+) False LOC120561883
XM_039804868.1 mRNA downstream 32687 37565756 ~ 37568029 (+) True LOC120561682
XM_039806782.1 mRNA downstream 44410 37577479 ~ 37578431 (+) True LOC120562860
XM_039806179.1 mRNA downstream 45528 37578597 ~ 37579855 (+) True LOC120562465
XM_039804927.1 mRNA downstream 50054 37583123 ~ 37586138 (+) True LOC120561715
XM_039806183.1 mRNA downstream 173036 37706105 ~ 37709961 (+) True LOC120562469
TU105685 other upstream 98329 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 602137 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 827143 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 1065778 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 1096783 36392252 ~ 36434225 (+) False LOC120563181
TU106195 other downstream 345895 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 523347 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 554907 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 636985 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 636985 38170054 ~ 38320429 (+) False G79351

Expression Profile