RNA id: TU105750


Basic Information

Item Value
RNA id TU105750
length 288
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G79030
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36092202 ~ 36093639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGTCAACGATTCCTTTTCTCTTACCAGATATTTTGGCGCTGCTTTTCTTCGGACTCGCCAGGTCTTGCTGCGACGTCTCCATCGGATCCTCCACTTCTTCCTCTGACACTGCAGAGCTGTACCTCGCTTCCTCCGCAACCTCACTCATATCGCACCGCCTCAGTCCGTCTGATTAATCCTTGTTGTGAAGCAGAGTGGACTGTGCGCGTCTCTCCTCTAGTTTCTTGTTTTCAATTTCATGATGGCGGTTTCTCTGGGGGGCGGGGATTACTGCGGCGTCTACTC

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105314 lncRNA downstream 29665 36061790 ~ 36062537 (-) True G78743
TU105299 lncRNA downstream 108163 35982408 ~ 35984039 (-) True G78729
TU105300 lncRNA downstream 109274 35982408 ~ 35982928 (-) False G78729
TU105261 lncRNA downstream 270551 35821285 ~ 35821651 (-) False G78698
TU105262 lncRNA downstream 270551 35821285 ~ 35821651 (-) True G78698
TU105755 lncRNA upstream 15823 36109462 ~ 36141399 (-) True G79033
TU105761 lncRNA upstream 19256 36112895 ~ 36171303 (-) True G79039
TU105763 lncRNA upstream 25398 36119037 ~ 36119489 (-) True G79041
TU105766 lncRNA upstream 28824 36122463 ~ 36186239 (-) True G79043
TU105770 lncRNA upstream 28824 36122463 ~ 36186239 (-) False G79043
XM_039807181.1 mRNA downstream 1710 36075620 ~ 36090492 (-) False LOC120563092
XM_039807180.1 mRNA downstream 1755 36075620 ~ 36090447 (-) False LOC120563092
XM_039807183.1 mRNA downstream 1755 36075620 ~ 36090447 (-) False LOC120563092
XM_039807179.1 mRNA downstream 1755 36075620 ~ 36090447 (-) True LOC120563092
XM_039807184.1 mRNA downstream 1755 36085901 ~ 36090447 (-) False LOC120563092
XM_039807335.1 mRNA upstream 98691 36192330 ~ 36317708 (-) True LOC120563179
XM_039807336.1 mRNA upstream 98691 36192330 ~ 36317100 (-) False LOC120563179
XM_039807345.1 mRNA upstream 245442 36339081 ~ 36359575 (-) True creb3l4
XM_039806168.1 mRNA upstream 458805 36552444 ~ 36559464 (-) True LOC120562455
XM_039807342.1 mRNA upstream 625854 36719493 ~ 36731530 (-) True LOC120563186
TU105304 other downstream 65660 36024731 ~ 36026542 (-) True G78733
XR_005639861.1 other downstream 782805 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 914963 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 956041 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 957140 35134991 ~ 35135062 (-) True trnap-ugg_1
TU105756 other upstream 9358 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 255590 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 255590 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 570903 36664542 ~ 36748224 (-) False LOC120563186
TU105962 other upstream 1014344 37107983 ~ 37206266 (-) False LOC120562574

Expression Profile