RNA id: TU105766


Basic Information

Item Value
RNA id TU105766
length 2664
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G79043
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36122463 ~ 36186239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttttttctccatcagaCACACTGGAGACGGATGAAAAACAAAGCTGAAATGCCTCCTGTGGAGACACGCCATTAAATTGAGTTGGCCAAACCCACAAATGCTTGCACCATGACTTTGAATTTCTTGGTCTGCATAGTCTGAAATGTGGTCATATTGTAGTCAGTCTGAGTCATGGAAGTTGTGGGTACTTTCCCTATCTTTGTTCAGTTACATTACTGTCAGCTTCAGAACTGACTCACCTCAGCGTcttcagtctgcagtgtggGCTTTGGAGTCCAGCGCAGAGAGACTCGATTCCTGAGTCTTGTAAGTTGTTGTCACTTATGTTTAAGTGAATCAGCTCATTAGAGCTTGAGCTGAAAGCTTCTGACAGCTTCTGACAGCAGTCTGCAGTTAGATTACAATCATTCAACCTGATAAACAGAAAGACACAGTGAACTTGTTAGAAAACAAAATCTACGGTTTAAGACACAGGATATTCACATCCAGTAATAAGGATGAAGGATACTTGCTTTGCTGATCTGGATGCTTTGATGGCTGGTAGGAGCCTGAAAAGGCCGTCTTCTGTTCTGGAGTATTTCTTGAGGTGGATCTCCTCTGGTTTCTCTGGTGAGGTCAGCAACGCAAAGACTAGAGCCGCCCACCGAGCTGCAGAGCACCCGTCCATTGCCAAGTCTTGGTCTGAGTCCAAGTGGCTCTGGATCTCCTCCACCAGAGTGTGTTCATTTAactcattcagacagtggaagagaTTGATGTACCTCTCGGACTGATGAGTCTGATCTATTTTCTCCTTGATGTACTTGATGGTTTCCTCATGACTTTGGGAGTCACAGGTTTCTACCTTAATGTTCAGGCCTCTGAGCAGACCCTGACTGGATTCCAGAGAGAGTCCGAAAAGGAAACGCAGGAAGAGATCCAGGTGGCCGTTGTCACTTTTTAAGGCTCTGTCCACTGCAGCTTTGTGCAGTTCGGATACAGGCTTGGCGTGGTCTACCTGTTCAGGTTCTTCGGTCATCAGGTTTAGTCCATAGGCCTTGTACATCACGTGGACATACAAAGCTGCGAGAAACTCTTGGACAGACAGATGCACAAAGCAGAAGACTTTATGCTGCATCCAGGACTCTTCCCTAAAGACTTGAGTGCACACTCCTGAGTAGACAGAGGCGTCTTTGACATCAATACCACAGTCTCTTAGATCGTCctcatagaagatcaggttgcctttctcCAGCTGCTGGAAGGCCAACTTCCCAAGTGCCATAATCACCTTGTTATTACCTTGGGAGTCCAGTTGTTGCTCTTTGCCGTACTTGACATGAATCTGTACAGTCTGATGTGCCAGAAAGTGGATGTACATCTGAGTCAAAGTCTTTGGCATTTTTCCTCCGCCTGCTTTGGCACACATTTTTCCAAGGACGATAGAGGAAATCCAGCAAAACACCGGCACGTGGCACATGATGTAGAGACTTCTAGTCGACTTTATGTTTGCGATAACTCTTCTGGCTAAGGTTTCATCATCGATTTTCTTGTTGAAGTACTGCTCCTTCTGTAGGTTGTTGAAGCCTCGTATCTCAGTCACCCGGTCGACATACTGTGAAGGGAGGCAGTTTGCGGCAGCAGGCCGAGTAGTTATCCAAAGTTTAGCTTTTGGTAGCAGTTGACCTGCAATGAGGTTTGTTAGGAGTACATCCACGGAGGCAGACTGTGTAGCTTCACAACATCTCTCATTTCCTTTGAAATCCAGAGGGAGTCTGCACTCATCGAGACCATCCAGTAGGAACATAACTTTGTACATCTGTAGGTCTTTTATTCCAGATTCATTCAGGCCTGGAGAGAAGTCATACAGGAGCTCCATCAAACTTCTTGTTTCATTTTTGAGAAAATTTAGTTCCCTTAAAGGAAGTGAAAACAGGAGCTGGATGTCTTGATTGGCCTTATCCTCCGACCAGTCCAGCATGAACTTCTGTGCCATCACAGTTTTGCCGATGCCTGCTATCCCCTTCGTGAGCACCGTTCGGATTGGTTTGGCTATTTGGTTGTGTTTGGCCTTGAAGATGTCTTCACACTTGATCAGAGTTTCAGAAGAATTCTGACGTCTGTTAAAGGCTGTCTCAATTTGTCTCACTTCATGTTCAATGTTGACTTCTCCAAAGTCCCCATCTATCAGATATAGCTTTGTATAAATCTTTCTAAGAGGCACAGGCCACTGCTGTGTCTCTTCCAATATGCAGTCACTTTTCTCCTTCAGGTaaggttttattttctgttggtACATGACGAGTTCTCCATAATGACCTAACAGCACAGAAATGTGTAAcatcaataacaataacaacaatgcATGTGCTTTTCCCTCTTGTTACCCTTTACACCAGTTCTGAGGAGGTTGTAATGCTCGTTACTAGGGGTGTTTCCAATTGTAAATTGAAAATTGATTGAAATGAGCTTTCGATTTTGAGTATCAAAATCAGAAGCAGGATCAGCGATTCCAACAGTATTTGTTTCTCCCTTCAGCCACCTACTTGTACATGTCAGACGAAAAACAAAATAGACACAGCGTAGCTTagcggctggtagcatgcagctaaagacacagggtaacataGCGGTTGCCTGCAGCTGCTGTTTTCAGTCATCATGGCCACTGCCAGAGCCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105763 lncRNA downstream 2974 36119037 ~ 36119489 (-) True G79041
TU105750 lncRNA downstream 28824 36092202 ~ 36093639 (-) True G79030
TU105314 lncRNA downstream 59926 36061790 ~ 36062537 (-) True G78743
TU105299 lncRNA downstream 138424 35982408 ~ 35984039 (-) True G78729
TU105300 lncRNA downstream 139535 35982408 ~ 35982928 (-) False G78729
TU105794 lncRNA upstream 16454 36202693 ~ 36205064 (-) True G79058
TU105795 lncRNA upstream 49673 36235912 ~ 36241139 (-) True G79059
TU105806 lncRNA upstream 164292 36350531 ~ 36400516 (-) True G79063
TU105812 lncRNA upstream 171563 36357802 ~ 36390295 (-) True G79066
TU105822 lncRNA upstream 194834 36381073 ~ 36401339 (-) True G79073
XM_039807181.1 mRNA downstream 31971 36075620 ~ 36090492 (-) False LOC120563092
XM_039807180.1 mRNA downstream 32016 36075620 ~ 36090447 (-) False LOC120563092
XM_039807183.1 mRNA downstream 32016 36075620 ~ 36090447 (-) False LOC120563092
XM_039807179.1 mRNA downstream 32016 36075620 ~ 36090447 (-) True LOC120563092
XM_039807184.1 mRNA downstream 32016 36085901 ~ 36090447 (-) False LOC120563092
XM_039807335.1 mRNA upstream 6091 36192330 ~ 36317708 (-) True LOC120563179
XM_039807336.1 mRNA upstream 6091 36192330 ~ 36317100 (-) False LOC120563179
XM_039807345.1 mRNA upstream 152842 36339081 ~ 36359575 (-) True creb3l4
XM_039806168.1 mRNA upstream 366205 36552444 ~ 36559464 (-) True LOC120562455
XM_039807342.1 mRNA upstream 533254 36719493 ~ 36731530 (-) True LOC120563186
TU105756 other downstream 16788 36102997 ~ 36105675 (-) True G79034
TU105304 other downstream 95921 36024731 ~ 36026542 (-) True G78733
XR_005639861.1 other downstream 813066 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 945224 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 986302 35136090 ~ 35136161 (-) True trnap-cgg_2
TU105798 other upstream 162990 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 162990 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 478303 36664542 ~ 36748224 (-) False LOC120563186
TU105962 other upstream 921744 37107983 ~ 37206266 (-) False LOC120562574
XR_005639615.1 other upstream 1309423 37495662 ~ 37519394 (-) False LOC120561551

Expression Profile