RNA id: TU105996



Basic Information


Item Value
RNA id TU105996
length 1083
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G79182
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36895391 ~ 36899782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGATGTCCATGGCCTGTTTGAGCTCCCCTCTGCCCCGCTGGTTGTTGTTGGTCAGGTCCACCAGCGGCGTGTTCTGGTCGCTCTCCGTGGTGAACATGCTGCCGTCCACGAACCTCTCCGGCGCGATGTAGCACGTCCGCCGCCGCGACGTGTCGAAGAAGTAGTTGAAGTCGGCGGGGTTGTCCTCCGGCAGGTACGTGGGCTTGAAGCTGGCGAAGTCGGTGAGCAGCACCCAGTTCCAGCTGGTCACCATCACGTTCTCCGTCTTGATGTCGCCGTGGCGCACGCCGGCGCGGTGCGCCTGGTCCACGGCGTTGAGGATCTGGAAGGCCAGCCAGCGCTTCTCCACGTTGTTGAGGAAGGGCCGCGTGCTGATGCGGTCGTACAGGTTGTCGCGGGCGTACTGGCGGAACAGGATGGCCGCCTTCTCCGTCAGCGAGGCTTTCTGGAACGGCAGGCAGTTCTGGCACGAGTGCAGGCGGatcttcagctcctccagctCCTGCTTGTAGCTGGTCAGCGGCAGCGACGGGTCCTGGATGGCGAAGACCTTGACCACCACCAGGCCCTCGCGGTGCTTGGCCCGCGCCACCTTGAAGAAGCGCGTGCTGCCCAGGCTCTTGTCGTACTCGTGGTCGTGGATGTCTGAGAAGTAGCTGTCCACGGACAGGATCTGGGAGGGGGCGATGCCCGCCAGCTGGTTCCCCATCGCGGCGCCTCAACACAAACGCCAGCTGCTGCTGACAGgaccgttgttgttgttgttgttgttgttgttgatgatgatgatgatgatgatgatgagtgtgtatgtgtgctaatAGCAGGCTAGCGAGCAGTTGACGTTTAAAGCGACGCTGCTAACGGTAACAAACTTCAGCCTGAACGCGGAGTAACCGTCTTCATTTCGTTTCCCGGTGCTTTTGGCTACGACAGCTGTCAAGCTATCGTCGCCGTCCTGCCGCCGTTAAAACGCCCCGCTGTGGTAAACGGACCGTAACCGTTAAAAATAAAACGTAAAAAAGTAGCAGCCTGAATCACGGTTAGCTTGTTAGCCGTTTTCATCTGTTGTTATGAATCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105994 lncRNA downstream 2563 36892063 ~ 36892828 (-) False kiaa0319
TU105995 lncRNA downstream 5539 36889176 ~ 36889852 (-) True G79181
TU105990 lncRNA downstream 19171 36867667 ~ 36876220 (-) False kiaa0319
TU105933 lncRNA downstream 102479 36759636 ~ 36792912 (-) True G79145
TU105931 lncRNA downstream 136256 36758449 ~ 36759135 (-) True G79144
TU105973 lncRNA upstream 4266 36904048 ~ 36917822 (-) True G79171
TU105877 lncRNA upstream 23041 36922823 ~ 36943509 (-) False G79112
TU105878 lncRNA upstream 23041 36922823 ~ 36970334 (-) False G79112
TU106013 lncRNA upstream 68884 36968666 ~ 37014737 (-) False G79197
TU106014 lncRNA upstream 68884 36968666 ~ 37014737 (-) False G79197
XM_039806173.1 mRNA downstream 753 36867669 ~ 36894638 (-) True kiaa0319
XM_039807054.1 mRNA downstream 43323 36841501 ~ 36852068 (-) True LOC120563048
XM_039807343.1 mRNA downstream 147153 36719504 ~ 36748238 (-) False LOC120563186
XM_039807342.1 mRNA downstream 163861 36719493 ~ 36731530 (-) True LOC120563186
XM_039806168.1 mRNA downstream 335927 36552444 ~ 36559464 (-) True LOC120562455
XM_039806175.1 mRNA upstream 28282 36928064 ~ 37026751 (-) True col6a4a
XM_039806349.1 mRNA upstream 189042 37088824 ~ 37235129 (-) True LOC120562574
XM_039806351.1 mRNA upstream 349579 37249361 ~ 37315604 (-) True LOC120562575
XM_039804681.1 mRNA upstream 593018 37492800 ~ 37519389 (-) False LOC120561551
XM_039804680.1 mRNA upstream 593018 37492800 ~ 37519389 (-) True LOC120561551
TU105912 other downstream 147167 36664542 ~ 36748224 (-) False LOC120563186
TU105798 other downstream 535811 36349229 ~ 36359580 (-) False creb3l4
TU105799 other downstream 535811 36349229 ~ 36359580 (-) False creb3l4
TU105756 other downstream 789716 36102997 ~ 36105675 (-) True G79034
TU105304 other downstream 868849 36024731 ~ 36026542 (-) True G78733
TU105962 other upstream 208201 37107983 ~ 37206266 (-) False LOC120562574
XR_005639615.1 other upstream 595880 37495662 ~ 37519394 (-) False LOC120561551
TU106375 other upstream 884049 37783831 ~ 37793780 (-) False LOC120562472
TU106409 other upstream 1070705 37970487 ~ 37971348 (-) False LOC120562474
TU106430 other upstream 1181101 38080883 ~ 38190801 (-) False G79484

Expression Profile