RNA id: TU106021


Basic Information

Item Value
RNA id TU106021
length 633
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G79201
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37009366 ~ 37040445 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctgttacagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgtcacagctttagttactagttactagttactccgctacattcacctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccactacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcacctgttccagctttagttactagttactttagttactccgctacattcacctgttccagctttagttactagttacttcagttactccgctacattcacccattccagctttagttactagttactttagttactagttacttt

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106012 lncRNA downstream 4824 36992629 ~ 37004542 (-) True G79197
TU106017 lncRNA downstream 15090 36993788 ~ 36994276 (-) True G79199
TU105878 lncRNA downstream 39032 36922823 ~ 36970334 (-) False G79112
TU105877 lncRNA downstream 65857 36922823 ~ 36943509 (-) False G79112
TU105973 lncRNA downstream 91544 36904048 ~ 36917822 (-) True G79171
TU106038 lncRNA upstream 297017 37337462 ~ 37338405 (-) True G79213
TU106042 lncRNA upstream 297017 37337462 ~ 37338405 (-) False G79213
TU106046 lncRNA upstream 305456 37345901 ~ 37370583 (-) True G79216
TU106049 lncRNA upstream 308075 37348520 ~ 37374675 (-) True G79218
TU106055 lncRNA upstream 351901 37392346 ~ 37393853 (-) True G79223
XM_039806173.1 mRNA downstream 114728 36867669 ~ 36894638 (-) True kiaa0319
XM_039807054.1 mRNA downstream 157298 36841501 ~ 36852068 (-) True LOC120563048
XM_039807343.1 mRNA downstream 261128 36719504 ~ 36748238 (-) False LOC120563186
XM_039807342.1 mRNA downstream 277836 36719493 ~ 36731530 (-) True LOC120563186
XM_039806168.1 mRNA downstream 449902 36552444 ~ 36559464 (-) True LOC120562455
XM_039806349.1 mRNA upstream 48379 37088824 ~ 37235129 (-) True LOC120562574
XM_039806351.1 mRNA upstream 208916 37249361 ~ 37315604 (-) True LOC120562575
XM_039804681.1 mRNA upstream 452355 37492800 ~ 37519389 (-) False LOC120561551
XM_039804680.1 mRNA upstream 452355 37492800 ~ 37519389 (-) True LOC120561551
XM_039806178.1 mRNA upstream 484056 37524501 ~ 37529217 (-) True rpp25l
TU105912 other downstream 261142 36664542 ~ 36748224 (-) False LOC120563186
TU105798 other downstream 649786 36349229 ~ 36359580 (-) False creb3l4
TU105799 other downstream 649786 36349229 ~ 36359580 (-) False creb3l4
TU105756 other downstream 903691 36102997 ~ 36105675 (-) True G79034
TU105304 other downstream 982824 36024731 ~ 36026542 (-) True G78733
TU105962 other upstream 67538 37107983 ~ 37206266 (-) False LOC120562574
XR_005639615.1 other upstream 455217 37495662 ~ 37519394 (-) False LOC120561551
TU106375 other upstream 743386 37783831 ~ 37793780 (-) False LOC120562472
TU106409 other upstream 930042 37970487 ~ 37971348 (-) False LOC120562474
TU106430 other upstream 1040438 38080883 ~ 38190801 (-) False G79484

Expression Profile