RNA id: TU106146


Basic Information

Item Value
RNA id TU106146
length 242
lncRNA type intronic
GC content 0.47
exon number 2
gene id G79285
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38063697 ~ 38221749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctagactatctgtccaatcggagtcttctgttgcacgactaaaactacttctgaaggtctacatgttccaccaaaacaagttccttcctgagactacacagacacacacacacacacagacacacacagagacacacacacacacacagagacacacacacagacacacacagagacacacacacacagacacacacacacagacacacagagacacacacacacacagagacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106150 lncRNA upstream 3305 38126801 ~ 38128972 (+) True G79286
TU106145 lncRNA upstream 8535 38063697 ~ 38123742 (+) False G79285
TU106219 lncRNA upstream 67079 38064349 ~ 38065198 (+) True G79338
TU106218 lncRNA upstream 73856 38058107 ~ 38058421 (+) True G79337
TU106199 lncRNA upstream 188903 37942894 ~ 37943374 (+) True G79322
TU106240 lncRNA downstream 18162 38150814 ~ 38189239 (+) True G79349
TU106245 lncRNA downstream 37402 38170054 ~ 38250032 (+) False G79351
TU106248 lncRNA downstream 37402 38170054 ~ 38324620 (+) False G79351
TU106251 lncRNA downstream 49498 38182150 ~ 38188752 (+) True LOC120562476
TU106252 lncRNA downstream 54964 38187616 ~ 38235991 (+) True G79355
XM_039804778.1 mRNA upstream 244271 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 286563 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 286563 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 389811 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 412248 37717368 ~ 37720029 (+) True LOC120561575
XM_039806189.1 mRNA downstream 49583 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 124551 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 135625 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 155085 38287737 ~ 38291323 (+) True LOC120563007
XM_039806193.1 mRNA downstream 168802 38301454 ~ 38305892 (+) True LOC120562481
TU106210 other upstream 54628 38056416 ~ 38077649 (+) False nek11
TU106195 other upstream 248327 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 599208 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 599208 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 699598 37431171 ~ 37432679 (+) True G78989
TU106244 other downstream 37402 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 37402 38170054 ~ 38320429 (+) False G79351
TU106280 other downstream 168773 38301425 ~ 38303688 (+) False LOC120562481
TU106301 other downstream 301341 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 533620 38666272 ~ 38667524 (+) False G79605

Expression Profile