RNA id: TU106172


Basic Information

Item Value
RNA id TU106172
length 256
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G79305
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37772240 ~ 37775336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGACGGGACGCTCTTTGGGGGCTCGATGCGGATGGTGGGGTCCCATTCGCCCGGAGGAAGCACCGTGACCTGATCCAGGAACTCATCGATCCCTGACAGCAGGTCGATCCGGTCCTTCGCCTTGTAGGCCACATCGTGGAAAAtctaccagagagagagacagagagagagacagcatgcTACTGTACAACTGTAtgtaaagagagagagagacagagagagagacagcatgcTACTGTACAACTGTATGTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106162 lncRNA upstream 12066 37759235 ~ 37760174 (+) True G79297
TU106130 lncRNA upstream 17992 37742732 ~ 37754248 (+) False G79284
TU106141 lncRNA upstream 24233 37733208 ~ 37748007 (+) False G79284
TU106136 lncRNA upstream 27995 37737832 ~ 37744245 (+) True G79284
TU106131 lncRNA upstream 38513 37733208 ~ 37733727 (+) False G79284
TU106178 lncRNA downstream 20324 37795660 ~ 37796216 (+) False G79309
TU106179 lncRNA downstream 20324 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA downstream 20324 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA downstream 20324 37795660 ~ 37798563 (+) False G79309
TU106194 lncRNA downstream 100399 37875735 ~ 37876077 (+) True G79317
XM_039806380.1 mRNA upstream 29774 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 52211 37717368 ~ 37720029 (+) True LOC120561575
XM_039806183.1 mRNA upstream 62279 37706105 ~ 37709961 (+) True LOC120562469
XM_039804927.1 mRNA upstream 186102 37583123 ~ 37586138 (+) True LOC120561715
XM_039806179.1 mRNA upstream 192385 37578597 ~ 37579855 (+) True LOC120562465
XM_039804901.1 mRNA downstream 51553 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA downstream 51646 37826982 ~ 37845714 (+) False LOC120561705
XM_039804778.1 mRNA downstream 103580 37878916 ~ 37888006 (+) True cmtm7
XM_039806188.1 mRNA downstream 281080 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 406899 38182235 ~ 38188763 (+) False LOC120562476
TU105717 other upstream 239171 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 239171 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 339561 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 843369 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1068375 36691393 ~ 36703865 (+) True LOC120562457
TU106195 other downstream 103628 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 281080 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 312640 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 394718 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 394718 38170054 ~ 38320429 (+) False G79351

Expression Profile