RNA id: TU106195


Basic Information

Item Value
RNA id TU106195
length 524
RNA type TUCP
GC content 0.55
exon number 2
gene id cmtm7
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37878916 ~ 37888006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGACGGCCGATCGCTAACTAACGTTATCCCAGTCGACGGTGCCGCTGTGTAGCAGTTTAAcccgtgttgttttttttattttaacattgtaaACATCATATATTTCTCTATATTTCAACATGTCGCACACCGTCATCACCACGACGACAACAACCAGGACGTCCGCGGACGGCGTCCTGAACACGGGCTACACCCGCACCATCCCGGGACTGCTGAAGATCGGGCAGATGCTGGCGCTGCTCGTGGCCTTCCTGTGCGTGCACTGCGTATTCGGCTGGCCCAACTGGGCGGCCATGCAGTTCTTCGAGGTGGTGGTGCTGTGGTTCCTCATCGCCTTCCTCATCTTCTtcctcatgcacctgttcaggCTGCAGGCCAGGATGCCCTGCATCAACTGGCCGCTGACGGTGAGTCGGAACACCTTTccacagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgttgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106194 lncRNA upstream 2887 37875735 ~ 37876077 (+) True G79317
TU106179 lncRNA upstream 6777 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA upstream 79886 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA upstream 80401 37795660 ~ 37798563 (+) False G79309
TU106143 lncRNA upstream 81762 37734462 ~ 37797202 (+) False G79284
TU106199 lncRNA downstream 58944 37942894 ~ 37943374 (+) True G79322
TU106218 lncRNA downstream 174157 38058107 ~ 38058421 (+) True G79337
TU106145 lncRNA downstream 179747 38063697 ~ 38123742 (+) False G79285
TU106149 lncRNA downstream 179747 38063697 ~ 38133859 (+) False G79285
TU106219 lncRNA downstream 180399 38064349 ~ 38065198 (+) True G79338
XM_039804901.1 mRNA upstream 33250 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 33250 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 136498 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 158935 37717368 ~ 37720029 (+) True LOC120561575
XM_039806183.1 mRNA upstream 169003 37706105 ~ 37709961 (+) True LOC120562469
XM_039806188.1 mRNA downstream 172466 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 298285 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 373253 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 384327 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 403787 38287737 ~ 38291323 (+) True LOC120563007
TU105717 other upstream 345895 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 345895 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 446285 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 950093 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1175099 36691393 ~ 36703865 (+) True LOC120562457
TU106210 other downstream 172466 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 204026 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 286104 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 286104 38170054 ~ 38320429 (+) False G79351
TU106280 other downstream 417475 38301425 ~ 38303688 (+) False LOC120562481

Expression Profile