RNA id: XM_039804778.1


Basic Information

Item Value
RNA id XM_039804778.1
length 1213
RNA type mRNA
GC content 0.49
exon number 4
gene id cmtm7
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37878916 ~ 37888006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGCGTGTTTATCCGCTTTGCCTTGACACGGGTGTGACGCGCCATCCCGACGGCCGATCGCTAACTAACGTTATCCCAGTCGACGGTGCCGCTGTGTAGCAGTTTAAcccgtgttgttttttttattttaacattgtaaACATCATATATTTCTCTATATTTCAACATGTCGCACACCGTCATCACCACGACGACAACAACCAGGACGTCCGCGGACGGCGTCCTGAACACGGGCTACACCCGCACCATCCCGGGACTGCTGAAGATCGGGCAGATGCTGGCGCTGCTCGTGGCCTTCCTGTGCGTGCACTGCGTATTCGGCTGGCCCAACTGGGCGGCCATGCAGTTCTTCGAGGTGGTGGTGCTGTGGTTCCTCATCGCCTTCCTCATCTTCTtcctcatgcacctgttcaggCTGCAGGCCAGGATGCCCTGCATCAACTGGCCGCTGACGgtgtTTGGGTTCATAGCAACGTTCCTGATGGCTGTCAGTTTGTGGACGTCTTACAGCGTGACCTGCGGCTCTCATCAGACCGgtGCAGCAGTTTAATCAACGCCAGACGGTTGCGTTGGCAGTTTGTTGAGTCCTGCTGCTGTCAAGTTTTCTGCCTAGCAACCGCCTAGCAACCTCCTGGATACTCAACCCTGATTGGATAATAATTTAAACTCCCGACGTAATGGAACATGTGCTCCAGGACCAGCCGCCATTTTCAACAGTCTGAAACGTAAATATCATCCCGGTAAAGGACAGTAGTTACTCAGATTACTTTTCCCTCCGTAGATTTCTACACGTTAAAGGTGCTCAGTAACATTTCAGTAGAATCAGCGAAAGACATCGCTGTGGAAATAATCCAAAATCTCAACAGCTTTCTGTCCTGCCTTTCCCTCTTTGAAAAGGTAGacatcttatttttttacttcccctgtcactacccgatgtcgAGTGCAGACgcgagttgcgcatgcgtcactttgcgacaagtagcctatggttttgagctaacgttagcaatcaaacaatcatagatagctaaaactagtgccctatatttaggGCACTAGTTAAAACGTTAGCTAAGATGCTAAcggtgttttgagctaacgttggCAATCAAGTAGTCTCTtagatgctaacggcattttgagctaacgttagcaatcaagtagcctactagatgctaacggtgttttgagctaacattagcaatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106194 lncRNA upstream 2839 37875735 ~ 37876077 (+) True G79317
TU106179 lncRNA upstream 6729 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA upstream 79838 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA upstream 80353 37795660 ~ 37798563 (+) False G79309
TU106178 lncRNA upstream 82700 37795660 ~ 37796216 (+) False G79309
TU106199 lncRNA downstream 54888 37942894 ~ 37943374 (+) True G79322
TU106218 lncRNA downstream 170101 38058107 ~ 38058421 (+) True G79337
TU106145 lncRNA downstream 175691 38063697 ~ 38123742 (+) False G79285
TU106149 lncRNA downstream 175691 38063697 ~ 38133859 (+) False G79285
TU106219 lncRNA downstream 176343 38064349 ~ 38065198 (+) True G79338
XM_039804901.1 mRNA upstream 33202 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 33202 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 136450 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 158887 37717368 ~ 37720029 (+) True LOC120561575
XM_039806183.1 mRNA upstream 168955 37706105 ~ 37709961 (+) True LOC120562469
XM_039806188.1 mRNA downstream 168410 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 294229 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 369197 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 380271 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 399731 38287737 ~ 38291323 (+) True LOC120563007
TU105717 other upstream 345847 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 345847 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 446237 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 950045 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1175051 36691393 ~ 36703865 (+) True LOC120562457
TU106210 other downstream 168410 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 199970 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 282048 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 282048 38170054 ~ 38320429 (+) False G79351
TU106280 other downstream 413419 38301425 ~ 38303688 (+) False LOC120562481

Expression Profile