RNA id: TU106199


Basic Information

Item Value
RNA id TU106199
length 481
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G79322
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37942894 ~ 37943374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAACTGAAAAAACAGTTCTGTTCAGTAATGATTACATCATATGTTGATGGGTTCATGCTGATGCTTGTTTGTATTCACACCTCTGATTGCAGCGACACCTCATTGGTCGAGATGTCCTCATCTGACTAACCCATGCAGGTGTGAAcaaacttcctgtccagaggggtTCATCACACCGCCTTTAGGAGCCACTAATGGGCTGCAAAACATTGTTCATAGAGAGACAAATTAAATCTCACGGGAcctgactgtttgtgtgtctgactaagcccactatacacaacaaagtaaatggtcATTTAGCCCATCAAACACTGATCTATTGGGAGATGATTTTGGCACTTCAGTTTTAGCTCTGCTCATTAAAGGCATACATACACTTTTTTGCAGGTTGAGCTTGTACCCAGAAAAAGAACCAAAAGTTTCCAattgacctttttcacagcagacattttgacttgtcatcaTAGGAAAAgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106194 lncRNA upstream 66817 37875735 ~ 37876077 (+) True G79317
TU106179 lncRNA upstream 70707 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA upstream 143816 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA upstream 144331 37795660 ~ 37798563 (+) False G79309
TU106178 lncRNA upstream 146678 37795660 ~ 37796216 (+) False G79309
TU106218 lncRNA downstream 114733 38058107 ~ 38058421 (+) True G79337
TU106145 lncRNA downstream 120323 38063697 ~ 38123742 (+) False G79285
TU106149 lncRNA downstream 120323 38063697 ~ 38133859 (+) False G79285
TU106219 lncRNA downstream 120975 38064349 ~ 38065198 (+) True G79338
TU106144 lncRNA downstream 180087 38123461 ~ 38134321 (+) True G79285
XM_039804778.1 mRNA upstream 54888 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 97180 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 97180 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 200428 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 222865 37717368 ~ 37720029 (+) True LOC120561575
XM_039806188.1 mRNA downstream 113042 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 238861 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 313829 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 324903 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 344363 38287737 ~ 38291323 (+) True LOC120563007
TU106195 other upstream 58944 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 409825 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 409825 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 510215 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 1014023 36926712 ~ 36928871 (+) False G78888
TU106210 other downstream 113042 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 144602 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 226680 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 226680 38170054 ~ 38320429 (+) False G79351
TU106280 other downstream 358051 38301425 ~ 38303688 (+) False LOC120562481

Expression Profile