RNA id: TU106218


Basic Information

Item Value
RNA id TU106218
length 275
lncRNA type intronic
GC content 0.50
exon number 2
gene id G79337
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38058107 ~ 38058421 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtctgtgcgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctctctgtgtgtgtctctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtctctgttatgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106199 lncRNA upstream 114733 37942894 ~ 37943374 (+) True G79322
TU106194 lncRNA upstream 182030 37875735 ~ 37876077 (+) True G79317
TU106179 lncRNA upstream 185920 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA upstream 259029 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA upstream 259544 37795660 ~ 37798563 (+) False G79309
TU106145 lncRNA downstream 5276 38063697 ~ 38123742 (+) False G79285
TU106149 lncRNA downstream 5276 38063697 ~ 38133859 (+) False G79285
TU106219 lncRNA downstream 5928 38064349 ~ 38065198 (+) True G79338
TU106144 lncRNA downstream 65040 38123461 ~ 38134321 (+) True G79285
TU106147 lncRNA downstream 65454 38123875 ~ 38132652 (+) False G79285
XM_039804778.1 mRNA upstream 170101 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 212393 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 212393 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 315641 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 338078 37717368 ~ 37720029 (+) True LOC120561575
XM_039806189.1 mRNA downstream 123814 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 198782 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 209856 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 229316 38287737 ~ 38291323 (+) True LOC120563007
XM_039806193.1 mRNA downstream 243033 38301454 ~ 38305892 (+) True LOC120562481
TU106195 other upstream 174157 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 525038 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 525038 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 625428 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 1129236 36926712 ~ 36928871 (+) False G78888
TU106224 other downstream 29555 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 111633 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 111633 38170054 ~ 38320429 (+) False G79351
TU106280 other downstream 243004 38301425 ~ 38303688 (+) False LOC120562481
TU106301 other downstream 375572 38433993 ~ 38444670 (+) False cmtm6

Expression Profile