RNA id: TU106248


Basic Information

Item Value
RNA id TU106248
length 480
lncRNA type read_through
GC content 0.49
exon number 4
gene id G79351
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38170054 ~ 38324620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgagtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106144 lncRNA upstream 35733 38123461 ~ 38134321 (+) True G79285
TU106149 lncRNA upstream 36195 38063697 ~ 38133859 (+) False G79285
TU106147 lncRNA upstream 37402 38123875 ~ 38132652 (+) False G79285
TU106146 lncRNA upstream 37402 38132277 ~ 38132652 (+) False G79285
TU106150 lncRNA upstream 41082 38126801 ~ 38128972 (+) True G79286
XR_005639905.1 lncRNA downstream 42499 38367119 ~ 38367849 (+) True LOC120563039
TU106294 lncRNA downstream 49207 38373827 ~ 38376408 (+) True G79384
TU106295 lncRNA downstream 49207 38373827 ~ 38379212 (+) False G79384
TU106298 lncRNA downstream 55972 38380592 ~ 38380881 (+) True G79386
TU106282 lncRNA downstream 80491 38405111 ~ 38459995 (+) True G79374
XM_039806188.1 mRNA upstream 24250 38056416 ~ 38145804 (+) True nek11
XM_039804778.1 mRNA upstream 282048 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 324340 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 324340 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 427588 37734725 ~ 37742466 (+) True zgc:153896
XM_039807031.1 mRNA downstream 78532 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806195.1 mRNA downstream 109354 38433974 ~ 38455559 (+) True cmtm6
XM_039806199.1 mRNA downstream 200584 38525204 ~ 38575568 (+) True tg
XM_039807024.1 mRNA downstream 256898 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA downstream 256898 38581518 ~ 38590896 (+) False LOC120563014
TU106224 other upstream 24276 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 92405 38056416 ~ 38077649 (+) False nek11
TU106195 other upstream 286104 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 636985 37530690 ~ 37533069 (+) False G79007
TU106301 other downstream 109373 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 341652 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 367026 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 977419 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 989369 39313989 ~ 39321325 (+) False LOC120563015

Expression Profile