RNA id: TU106251


Basic Information

Item Value
RNA id TU106251
length 232
lncRNA type sense_over
GC content 0.54
exon number 2
gene id LOC120562476
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38182150 ~ 38188763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACTAAGTTGCCCTTTAGGTAGCTGTGTTTGAGGAACTTTGAGGTTGTCAGTCACacatgttgttgtgtttcctgGCGTGCAGACGGCGAGCTGTTCACCGCCACGACGACCAACTTCAGAGGAGTCGAACCACAGATTTCTCGACACTTCAGCAAAGACGGCCGCCCAGACGTCAGCCAGGACTCGTCGGTCAGCCTACTGGAGGAGCCAACGTTTGTGAGCTCGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106144 lncRNA upstream 47829 38123461 ~ 38134321 (+) True G79285
TU106149 lncRNA upstream 48291 38063697 ~ 38133859 (+) False G79285
TU106147 lncRNA upstream 49498 38123875 ~ 38132652 (+) False G79285
TU106146 lncRNA upstream 49498 38132277 ~ 38132652 (+) False G79285
TU106150 lncRNA upstream 53178 38126801 ~ 38128972 (+) True G79286
TU106256 lncRNA downstream 35816 38224568 ~ 38225472 (+) True G79359
TU106270 lncRNA downstream 75983 38264735 ~ 38265277 (+) True G79367
TU106271 lncRNA downstream 75983 38264735 ~ 38265277 (+) False G79367
XR_005639905.1 lncRNA downstream 178367 38367119 ~ 38367849 (+) True LOC120563039
TU106294 lncRNA downstream 185075 38373827 ~ 38376408 (+) True G79384
XM_039806188.1 mRNA upstream 36346 38056416 ~ 38145804 (+) True nek11
XM_039804778.1 mRNA upstream 294144 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 336436 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 336436 37826982 ~ 37845714 (+) False LOC120561705
XM_039806380.1 mRNA upstream 439684 37734725 ~ 37742466 (+) True zgc:153896
XM_039807006.1 mRNA downstream 68451 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 79525 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 98985 38287737 ~ 38291323 (+) True LOC120563007
XM_039806193.1 mRNA downstream 112702 38301454 ~ 38305892 (+) True LOC120562481
XM_039807031.1 mRNA downstream 214400 38403152 ~ 38428485 (+) True si:dkey-7j14.6
TU106224 other upstream 36372 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 104501 38056416 ~ 38077649 (+) False nek11
TU106195 other upstream 298200 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 649081 37530690 ~ 37533069 (+) False G79007
TU106280 other downstream 112673 38301425 ~ 38303688 (+) False LOC120562481
TU106301 other downstream 245241 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 477520 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 502894 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 1113287 39302039 ~ 39304070 (+) True dcst2

Expression Profile