RNA id: TU106298


Basic Information

Item Value
RNA id TU106298
length 262
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G79386
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38380592 ~ 38380881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtaggctgctggaaacacccactatcaacacacaggaccagctgaccaatcacagtccttgaaacacagactatcaacacacaggaccagttgaccaatcacagtcacacaggaccagctgaccaatcacagtccttgaaacacagactatcaacacacaggaccagttgaccaatcacagtcacacaggaccagctgaccaatcacagtccttgaaacacagactatcaacacacaggaccagttgaccaatcacagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106295 lncRNA upstream 1380 38373827 ~ 38379212 (+) False G79384
TU106294 lncRNA upstream 4184 38373827 ~ 38376408 (+) True G79384
XR_005639905.1 lncRNA upstream 12743 38367119 ~ 38367849 (+) True LOC120563039
TU106270 lncRNA upstream 115315 38264735 ~ 38265277 (+) True G79367
TU106271 lncRNA upstream 115315 38264735 ~ 38265277 (+) False G79367
TU106282 lncRNA downstream 24230 38405111 ~ 38459995 (+) True G79374
TU106275 lncRNA downstream 24596 38405477 ~ 38411096 (+) False G79370
TU106276 lncRNA downstream 24596 38405477 ~ 38412407 (+) True G79370
TU106304 lncRNA downstream 72265 38453146 ~ 38453826 (+) True G79392
TU106281 lncRNA downstream 75762 38456643 ~ 38521817 (+) True G79373
XM_039806193.1 mRNA upstream 74700 38301454 ~ 38305892 (+) True LOC120562481
XM_039807011.1 mRNA upstream 89269 38287737 ~ 38291323 (+) True LOC120563007
XM_039806192.1 mRNA upstream 110524 38268277 ~ 38270068 (+) True LOC120562479
XM_039807006.1 mRNA upstream 121557 38257203 ~ 38259035 (+) True LOC120563002
XM_039806189.1 mRNA upstream 191829 38182235 ~ 38188763 (+) False LOC120562476
XM_039807031.1 mRNA downstream 22271 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806195.1 mRNA downstream 53093 38433974 ~ 38455559 (+) True cmtm6
XM_039806199.1 mRNA downstream 144323 38525204 ~ 38575568 (+) True tg
XM_039807024.1 mRNA downstream 200637 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA downstream 200637 38581518 ~ 38590896 (+) False LOC120563014
TU106244 other upstream 59985 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 60163 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 76904 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 234814 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 302943 38056416 ~ 38077649 (+) False nek11
TU106301 other downstream 53112 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 285391 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 310765 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 921158 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 933108 39313989 ~ 39321325 (+) False LOC120563015

Expression Profile