RNA id: TU106301


Basic Information

Item Value
RNA id TU106301
length 418
RNA type TUCP
GC content 0.58
exon number 3
gene id cmtm6
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38433974 ~ 38455559 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGGAAGTCCGCCTGAAGTCACTTTATCAGTAGAAACAAAAGCAACAAGTACAAGTTGAACTTCGCAGCTCGGAACTTTCTTTTTCTGCCAACCGGAAGACGCTTAAACGCTCCATCATGACGGACGTTTACTCCCCGACGACGGCTCCCAACCCCAAATCCTCGTGGTTCACCGTCCCGTCAGACTCGCTGGACACGGTCCGCTGTGGCGTCAAAGGCCTGGAAGTGcTGCTGTCCCTCGTGGCCTTCGTCCTGGAGGAGGTGGTGAACAGCTGCGTCAACTGCTCGGCTCTCTACTTCTTTGAGTTTGTGAGCTGCACGGCCTTCCTCTTCACCCTGctgctcctcatcctcctctccaCCACGCTGCAGACCCGAGTGGGCATCACGTGCTGGCCCCGCCTGGTAAGACCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106276 lncRNA upstream 21586 38405477 ~ 38412407 (+) True G79370
TU106275 lncRNA upstream 22897 38405477 ~ 38411096 (+) False G79370
TU106298 lncRNA upstream 53112 38380592 ~ 38380881 (+) True G79386
TU106295 lncRNA upstream 54781 38373827 ~ 38379212 (+) False G79384
TU106294 lncRNA upstream 57585 38373827 ~ 38376408 (+) True G79384
TU106304 lncRNA downstream 8476 38453146 ~ 38453826 (+) True G79392
TU106281 lncRNA downstream 11973 38456643 ~ 38521817 (+) True G79373
TU106568 lncRNA downstream 111396 38556066 ~ 38556285 (+) True G79568
XR_005639903.1 lncRNA downstream 166589 38611259 ~ 38611869 (+) True LOC120563037
TU106607 lncRNA downstream 197878 38642548 ~ 38647914 (+) True LOC120563036
XM_039807031.1 mRNA upstream 5508 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806193.1 mRNA upstream 128101 38301454 ~ 38305892 (+) True LOC120562481
XM_039807011.1 mRNA upstream 142670 38287737 ~ 38291323 (+) True LOC120563007
XM_039806192.1 mRNA upstream 163925 38268277 ~ 38270068 (+) True LOC120562479
XM_039807006.1 mRNA upstream 174958 38257203 ~ 38259035 (+) True LOC120563002
XM_039806199.1 mRNA downstream 80534 38525204 ~ 38575568 (+) True tg
XM_039807024.1 mRNA downstream 136848 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA downstream 136848 38581518 ~ 38590896 (+) False LOC120563014
XM_039807004.1 mRNA downstream 149375 38594045 ~ 39098913 (+) True LOC120562999
XM_039807015.1 mRNA downstream 241109 38685779 ~ 38780360 (+) False cpne4a
TU106244 other upstream 113386 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 113564 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 130305 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 288215 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 356344 38056416 ~ 38077649 (+) False nek11
TU106613 other downstream 221602 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 246976 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 857369 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 869319 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 988791 39433461 ~ 39454292 (+) True G79713

Expression Profile