RNA id: TU106375



Basic Information


Item Value
RNA id TU106375
length 762
RNA type TUCP
GC content 0.56
exon number 4
gene id LOC120562472
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37744084 ~ 37796766 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtcgacaaaatcgtataagtgttggtcgactaagaagttctttagtcgaggacagccctactgtaatgcagcctttaaaaccaggagaagacaCTTATGCCACATTACCATTTTCATTTATCAGTGGTTTCTCATGAGCTTAATTGATGAGCCTGTAAAGACttagcagctgttgttgttgttgttgttgtgtctgcAGACACTCCGTCTCAGAGAGTCCAGTTCATCCTCGGGACGGAGGACGCCGACGAGGAGCACATCCCCCACGACCTGTTCACCGAGCTGGACGAGATCGCCTTCAGAGACGGAGACTTCCAGGAGTGGAAGGAGATGGCGAGATGGCTGAAGTTCGAGGAGGACGTGGAGGACGGCGGCGAGCGTTGGAGTAAACCGTACGTGGCCACGCTGTCTCTTCACAGTCTGTTCGAGCTGCGGTCCTGCATCCTGAACGGCACCGTGCTGCTCGACATGAGGGCCAACACCATCGAGGAGATCGCAGACATGGTGATCGACAGCATGCTGGCGTCGGGGCAGCTGGAGGAGGGCGTCCGAGAGAAGGTGAAGGAGGCCATGCTGAGGCGCCATCACCATCAGAGCGAGAAGAAGCTGAGCAACCGGATCCCGCTGGTGCGATCCTTCGCCGACATCGGCAAGAAGCACTCCGACTCCTATTTACTGGACCGCAACGGTCTGCTGGCGTCCCCCCAGTCGGCTCCAGGAAACCTCGACAGCAAGACCAGCGAGAGCCGCATCAACGGAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106359 lncRNA downstream 11235 37770705 ~ 37772596 (-) False LOC120562472
TU106362 lncRNA downstream 25010 37758201 ~ 37758821 (-) True G79441
TU106346 lncRNA downstream 51357 37731771 ~ 37732474 (-) True G79431
TU106334 lncRNA downstream 124512 37658532 ~ 37659319 (-) True G79419
TU106076 lncRNA downstream 233590 37516756 ~ 37550241 (-) True G79241
TU106370 lncRNA upstream 1649 37795429 ~ 37796710 (-) True G79443
TU106373 lncRNA upstream 1649 37795429 ~ 37831558 (-) False G79443
TU106353 lncRNA upstream 3036 37796816 ~ 37797945 (-) True G79433
TU106378 lncRNA upstream 33044 37826824 ~ 37866047 (-) True G79448
TU106397 lncRNA upstream 98155 37891935 ~ 37899984 (-) True G79463
XM_039806379.1 mRNA downstream 53765 37725589 ~ 37730066 (-) True mrps12
XM_039806182.1 mRNA downstream 88425 37693717 ~ 37695406 (-) True LOC120562468
XM_039806908.1 mRNA downstream 98218 37682235 ~ 37685613 (-) True LOC120562948
XM_039806909.1 mRNA downstream 108818 37672821 ~ 37675013 (-) True LOC120562949
XM_039806181.1 mRNA downstream 140940 37640039 ~ 37642891 (-) True LOC120562467
XM_039806185.1 mRNA upstream 57381 37851161 ~ 37854822 (-) True si:dkey-11p23.7
XM_039806186.1 mRNA upstream 164669 37958449 ~ 37971199 (-) True LOC120562474
XM_039806190.1 mRNA upstream 407765 38201545 ~ 38204728 (-) False LOC120562477
XM_039807023.1 mRNA upstream 418040 38211820 ~ 38230481 (-) True LOC120563013
XM_039807022.1 mRNA upstream 418040 38211820 ~ 38219193 (-) False LOC120563013
XR_005639615.1 other downstream 264437 37495662 ~ 37519394 (-) False LOC120561551
TU105962 other downstream 577565 37107983 ~ 37206266 (-) False LOC120562574
TU105912 other downstream 1035607 36664542 ~ 36748224 (-) False LOC120563186
TU105798 other downstream 1424251 36349229 ~ 36359580 (-) False creb3l4
TU105799 other downstream 1424251 36349229 ~ 36359580 (-) False creb3l4
TU106409 other upstream 176707 37970487 ~ 37971348 (-) False LOC120562474
TU106430 other upstream 287103 38080883 ~ 38190801 (-) False G79484
TU106471 other upstream 346689 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other upstream 407471 38201251 ~ 38205182 (-) True LOC120562477
TU106520 other upstream 527231 38321011 ~ 38324210 (-) False LOC120562482

Expression Profile