RNA id: TU106438


Basic Information

Item Value
RNA id TU106438
length 580
lncRNA type read_through
GC content 0.47
exon number 5
gene id G79484
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38063698 ~ 38221760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtttctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttctgtgtgtgtctgttatgtgtgtgtgtgtgtgtttttgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgtctgtgtgtgtgtgtctgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtatgtgttttttatgtgtgtgtgtgtgtgtgtgtatttatgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106449 lncRNA downstream 14298 38109919 ~ 38112627 (-) True G79492
TU106446 lncRNA downstream 25997 38100301 ~ 38100928 (-) True G79491
TU106445 lncRNA downstream 35129 38090654 ~ 38091796 (-) True G79490
TU106440 lncRNA downstream 39418 38081731 ~ 38087507 (-) True G79486
TU106441 lncRNA downstream 39418 38087265 ~ 38087507 (-) False G79486
TU106485 lncRNA upstream 958 38222718 ~ 38225154 (-) True G79507
TU106486 lncRNA upstream 2446 38224206 ~ 38226088 (-) False G79507
TU106493 lncRNA upstream 28346 38250106 ~ 38255038 (-) True G79510
TU106505 lncRNA upstream 65981 38287741 ~ 38292299 (-) True G79518
XR_005639891.1 lncRNA upstream 95643 38317403 ~ 38317847 (-) True LOC120563025
XM_039806186.1 mRNA downstream 155726 37958449 ~ 37971199 (-) True LOC120562474
XM_039806185.1 mRNA downstream 272103 37851161 ~ 37854822 (-) True si:dkey-11p23.7
XM_039806184.1 mRNA downstream 330159 37744084 ~ 37796766 (-) True LOC120562472
XM_039806379.1 mRNA downstream 396859 37725589 ~ 37730066 (-) True mrps12
XM_039806182.1 mRNA downstream 431519 37693717 ~ 37695406 (-) True LOC120562468
XM_039806191.1 mRNA upstream 7798 38229558 ~ 38250551 (-) True dcst1
XM_039806194.1 mRNA upstream 97184 38318944 ~ 38324284 (-) True LOC120562482
XM_039807009.1 mRNA upstream 103522 38325282 ~ 38327753 (-) True LOC120563006
XM_039807005.1 mRNA upstream 113724 38335484 ~ 38337715 (-) True LOC120563000
XM_039807007.1 mRNA upstream 122318 38344078 ~ 38346701 (-) True LOC120563004
TU106409 other downstream 155577 37970487 ~ 37971348 (-) False LOC120562474
TU106375 other downstream 333145 37783831 ~ 37793780 (-) False LOC120562472
XR_005639615.1 other downstream 607531 37495662 ~ 37519394 (-) False LOC120561551
TU105962 other downstream 920659 37107983 ~ 37206266 (-) False LOC120562574
TU105912 other downstream 1378701 36664542 ~ 36748224 (-) False LOC120563186
TU106520 other upstream 99251 38321011 ~ 38324210 (-) False LOC120562482
TU106776 other upstream 450242 38672002 ~ 38680464 (-) False nudt17
TU106828 other upstream 685020 38906780 ~ 38908021 (-) False G79767
TU106829 other upstream 685020 38906780 ~ 38908021 (-) True G79767
TU106912 other upstream 876012 39097772 ~ 39138382 (-) True G79820

Expression Profile