RNA id: TU106535


Basic Information

Item Value
RNA id TU106535
length 546
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G79537
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38453116 ~ 38453844 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAcctgaggagaggagggagtgaATACACctgaggggaggagggagtgaATACACctgaggggaggagggagtgaACACACCTAAGGGAGGAGGGAGTGAATACACCTGAGGGAGGAGGGAGTGAACACACCTAAGGGAGGAGGGAGTGAACACACCTAAGGGAGGAGGGAGTGAACACACCTgagggaggaaaggagacaCTCGGTGCGTTTACATGCCCCAGTAGTAACTGGTCATGTGAATAACTGGCTTCTGCCAGTTCTCTCCCGTATACATGAGCGGGGAGAACGACTGCGTTCCTCTACCTCCGCTACAGTAGGTGGCGCTCTGCCAACGCACAGCGCTTTTTCCTTCCGGGTGACCTATGTCAAAACTACGCCAGACGGCCACTAAATCGGTGAAATGTAACAGCTTAATATTTCCTTTACACGTTCTTGTCACAGCGCAGGACAGCACCGTGTTCAAATgagcaattgttgctataaccttTCCCAAGTCATACTCTCTTGTTTAACTGGTGGactgtttatttgtgcattgtccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106542 lncRNA downstream 35194 38404427 ~ 38417922 (-) True G79544
TU106543 lncRNA downstream 36538 38404861 ~ 38416578 (-) True G79545
XR_005639892.1 lncRNA downstream 134478 38318135 ~ 38318638 (-) True LOC120563026
XR_005639891.1 lncRNA downstream 135269 38317403 ~ 38317847 (-) True LOC120563025
TU106505 lncRNA downstream 160817 38287741 ~ 38292299 (-) True G79518
TU106538 lncRNA upstream 4476 38458320 ~ 38460000 (-) True G79540
TU106560 lncRNA upstream 47570 38501414 ~ 38515045 (-) False LOC120563027
XR_005639893.1 lncRNA upstream 47583 38501427 ~ 38515075 (-) True LOC120563027
TU106562 lncRNA upstream 63283 38517127 ~ 38517658 (-) False LOC120562485
TU106563 lncRNA upstream 74601 38528445 ~ 38555962 (-) True G79563
XM_039807021.1 mRNA downstream 65932 38375662 ~ 38387184 (-) True LOC120563012
XM_039807007.1 mRNA downstream 106415 38344078 ~ 38346701 (-) True LOC120563004
XM_039807005.1 mRNA downstream 115401 38335484 ~ 38337715 (-) True LOC120563000
XM_039807009.1 mRNA downstream 125363 38325282 ~ 38327753 (-) True LOC120563006
XM_039806194.1 mRNA downstream 128832 38318944 ~ 38324284 (-) True LOC120562482
XM_039807008.1 mRNA upstream 18302 38472146 ~ 38474560 (-) True LOC120563005
XM_039806197.1 mRNA upstream 28311 38482155 ~ 38484865 (-) True LOC120562484
XM_039807027.1 mRNA upstream 36130 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA upstream 38697 38492541 ~ 38499657 (-) False LOC120563017
XM_039806198.1 mRNA upstream 62757 38516601 ~ 38522389 (-) True LOC120562485
TU106520 other downstream 128906 38321011 ~ 38324210 (-) False LOC120562482
TU106471 other downstream 247934 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other downstream 247934 38201251 ~ 38205182 (-) True LOC120562477
TU106430 other downstream 262315 38080883 ~ 38190801 (-) False G79484
TU106409 other downstream 481768 37970487 ~ 37971348 (-) False LOC120562474
TU106776 other upstream 218158 38672002 ~ 38680464 (-) False nudt17
TU106828 other upstream 452936 38906780 ~ 38908021 (-) False G79767
TU106829 other upstream 452936 38906780 ~ 38908021 (-) True G79767
TU106912 other upstream 643928 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 942417 39396261 ~ 39456639 (-) False G79872

Expression Profile