RNA id: XM_039807026.1


Basic Information

Item Value
RNA id XM_039807026.1
length 2673
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120563015
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39312639 ~ 39346432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTAACACTGACGAGGGTTagggtgtgtgtggttgttcATCAGGAGAGGATCTGGTTCCTCCGGCAGCAGATCCTGGATCAGAGGCGGGCGGAGGGGAGAGCGCTAAGAACgactgcaggaggaggaggaggaggaggaggaggaggaggagggagtcgCCTTCAAACTCTCCTGCTGAGgttACCTGGAGGGTCTTACCTGTCTCACCTGCTGGGTCTGTCGTCAGTCAGCTGTCTGTTCTGTGGCGAGGCGCTGAGACCAGAGGACGACAACACGACAGCCTGTGATGTCCCCCGGTGTCCAGGCGTGTACTGTCGGCCCTGTTTCCTCAGTTTGGGAAACACGTGTGTCGTCTGCGCGCGACCTCTGACCTTCCAGGAAGACGGCGAGGAGGAGCGGGACTCCAGCGATGACGAGCAGCTGAACCCGATTCACATCGCAGACACACCACTGATGAAGAGGAGAGacgagggagacagagacagcagagagagagacgagggagagagagacagcagagagagagacagcagagagagagacagcagactGGACTCTGACTCTGAGCTCAGAGCTTGTGTTTTCCCACGCTGCCTGCTGTCAGTGAAGCAGACATGTCGTACCAGGACACAGCCGGGTCGGACGACAGCCAGGACTCCTTCTACTCCTCCAGAGGCCTCCAAACCGTCATCGTACACGGACCGGACGAGCCCCCAAAACCTCCAGGATCCTGATCCAAAAACCATCTGCTGCTTTCAGCACAAAGGAGCTCTGGGTCAAAGAGTGAACTATCCAGATCCTGTTTGTGGTATAAAAGGATCGACCGTCACCCTCCCCTGCTCCTTCACACCGCTGGAGTCTGCCAAGATCATCAGAGTCGTCTGGTGCAAGAACCATGAAATCTGTCAGAGAACGACTCCGTCTGTGTACGACAGCgaatcaaacaacaacaaccctcgTTACAGATACCTGGGAGACCAGAAGGGAAACTGCACTTTACAGATCTCAGATCTACAGGAGGATGACAAcgcaacttttcgcttcagaaTGGAAGCTAATGATCCCGGAGCATCTTTTACTGGCCAATCAGGAGTGAGAGTCACAGTCGTAGATCAGATGGAGATAAGAAGCTCCAGAGATGTTGGAGAGTttaaaagaggagaagaagtcACACTGAACTGCACCACAATCTGCTCTATCCACCAACTGGAGGTCAGCTGGTTCAGAGATGGCTCCGCCCTCTCAGAGACTGGCCCCGCCCTCCATCTCAGCGATCTGACTGCAAAGGATTCTGGGAACTACACCTGTGGTTTGAAGAAGAACAAGCTCACCCTCTCAGAGCCGTACAGCCTGCATGTGGAGGCTGACCAGGAAGGAGGAGGTCGGCCTCTGATCGCTGGTCTGGTGGTCGGGGTCCTGCTGGTTCTCTTCGCTGTTGTTCTGGTCGTCTACATCAGCAAAAGGAAGAGAGCAGCAGGTCGGGATCAGACAGCCGTGGGACGGGACGAGGAACAAAAGCACTCTGATAACATCTACAGCAACGACTTCTTGCCGCTTGCTGAGCAGCAGGGACccagcagcgctgtggaggaagtcagCTACGCCTCGGTCCAGTTCACACACAAGAAGCAGGCCAGACCGGCAGAGGAGACGGAGGCCTCCATCATCTACAGCGCTGTAGCCAGAACAGGCTGAAGACAAACCACACCATGATGGcagatcatgttttttttgtaattttaaattacattttttatataattatcTTTTTATGAGTAAATTTCACATCAATTGACAAGTACAAATGGAATTACAGTTGTTAACATCAGAATTCTACAGAACCAAAGGTTTTGTATCAATAGTTTATTTTTCCAGATGTCCAATGTCCATTCCCTTTTTAataatatgtatacatatatatcagtTTGGCATCATTCAGTTGTGTTCACATCACTGAGGTACATTGGGAAACCCAAAAAAGTAGAAATCAGATAAAAAGTGGACGTTCCTTCAGCTCGTTACCTTGACAAAATCTGGTCTTAAAGGTCTGATGAATTGTACCCATTTTTCCCAGTGTTTTATGAATACGTCTAACTTTAGGTTGAGAGAAACAGTAACCTTTTCCatagtatatatatctatatatatatattgtcacATCTACCCAATTATTAATTGTAGGTCCAGTCTGCAACATCCATCTTTTAGTTAGGGCCTTTTTTCCTGCTGCCAGTTCTGGGGGGATATACCCTAAGTACATGATTTTGAAATCAaatggtgtatgtgtgttaaaaACATCTTGTATTGCTTTATGTATATCTTTCCTGTAACTTTGTATGTTTGGACATTCCCAGAACACATGGTAATGACCTGCAGCCTGACATCCACAATTACGCTGGGAATTACCATTACTTTGATATACCTTCATGAGTGGAGTGATGAAATATTGAGCTACATTTTTCCAGCAAAATTCCTTCCATGCATGGGATTTTGTAGTTTTCCATTGTAATACACAGATGTCCTCCCATTCATTGTCCATTATTGTTTGTCCTCCTTCCCATTCCCATTTGTCCTGTATGTATTTTGTTGAGGAAGTTTTCTGAATTTGGAGACTCTCCTTTATAGTTTAATGTTTGATTTATATGCATCAATAAATAGCTGGACAAAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106726 lncRNA upstream 4900 39230944 ~ 39307739 (+) True G79689
TU106595 lncRNA upstream 11251 39300168 ~ 39301388 (+) True G79587
TU106600 lncRNA upstream 80420 39229871 ~ 39232219 (+) True G79592
TU106723 lncRNA upstream 117647 39193980 ~ 39194992 (+) True G79686
TU106722 lncRNA upstream 119017 39191434 ~ 39193622 (+) True G79685
XR_005639899.1 lncRNA downstream 13042 39359474 ~ 39360686 (+) True LOC120563033
TU106750 lncRNA downstream 33856 39380288 ~ 39381667 (+) False G79710
TU106752 lncRNA downstream 33856 39380288 ~ 39381628 (+) True G79710
TU106577 lncRNA downstream 35604 39382036 ~ 39424898 (+) False G79573
TU106578 lncRNA downstream 38513 39384945 ~ 39424898 (+) False G79573
XM_039806202.1 mRNA upstream 6552 39302167 ~ 39306087 (+) False dcst2
XM_039806201.1 mRNA upstream 34136 39265833 ~ 39278503 (+) True LOC120562489
XM_039807036.1 mRNA upstream 281805 39020813 ~ 39030834 (+) True LOC120563022
XM_039807020.1 mRNA downstream 45516 39391948 ~ 39419673 (+) True LOC120563011
XM_039807012.1 mRNA downstream 78896 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA downstream 78896 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA downstream 78896 39425328 ~ 39427120 (+) False LOC120563008
XM_039806080.1 mRNA downstream 418741 39765173 ~ 39771420 (+) True LOC120562364
TU106594 other upstream 8569 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 601630 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 645115 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 867969 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 992210 38170054 ~ 38320429 (+) False G79351
TU106757 other downstream 87029 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 87029 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 114016 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 421495 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 970307 40316739 ~ 40321067 (+) True G80003

Expression Profile