RNA id: TU106600


Basic Information

Item Value
RNA id TU106600
length 646
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G79592
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39229871 ~ 39232219 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGGAGGTTacccaggaggaggaggaggaggtctgCGTCTGATCGTTGGTCTGGTGTTCGGGGTCCTGCTGGTTCTCTTCACTGTTATTCTGGTCGTCTACATCATCAAAAGGAAGAGAGCAGCAGGTCAGGATCAAACAGCCGTGGGACGGGACGAGGAACAACAGCACTATGATAACATCTACAGCAACGACTTCCTGCCGCTTGCTGAGCAGCAGGGACccagcagcgctgtggaggaagtcagCTACGCCTCTGTCCAGTTCACACACAAGAAGCAGGCCAGaccGGCTGAGGAGATGGAGGACTCCATCATCTACAGCGCTGTAGCCTGAACAGGCTGAAAATAAACCACACCATAATGGCagataatgtttttaaatttgaatttatatataataataattaatataataaatttaaagttaaattttaaaaaagcaacaaaaacttttgGAAAAAGCTCAGTTTTTATTGTTGGGGGGGTTGTAACCCCCTTATCCTCTACACAAATTACACCTGTGATTTCACCTGTCccttctttctgtgtgtgtgtgtgtgtgtgtgtgtgacctctcAGTTTTACTGTTGCATcaataatactttttttcataatatattTCGTTTAAATAAGTACTGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106723 lncRNA upstream 34879 39193980 ~ 39194992 (+) True G79686
TU106722 lncRNA upstream 36249 39191434 ~ 39193622 (+) True G79685
TU106716 lncRNA upstream 93115 39136486 ~ 39136756 (+) True G79679
XR_005639901.1 lncRNA upstream 107919 39120310 ~ 39121952 (+) True LOC120563035
TU106602 lncRNA upstream 131259 39094890 ~ 39098612 (+) False LOC120562999
TU106595 lncRNA downstream 67949 39300168 ~ 39301388 (+) True G79587
TU106591 lncRNA downstream 89213 39321432 ~ 39323436 (+) False LOC120563019
XR_005639898.1 lncRNA downstream 103132 39335351 ~ 39335951 (+) True LOC120563032
XR_005639899.1 lncRNA downstream 127255 39359474 ~ 39360686 (+) True LOC120563033
TU106750 lncRNA downstream 148069 39380288 ~ 39381667 (+) False G79710
XM_039807004.1 mRNA upstream 130958 38594045 ~ 39098913 (+) True LOC120562999
XM_039807035.1 mRNA upstream 199037 39020810 ~ 39030834 (+) False LOC120563022
XM_039807036.1 mRNA upstream 199037 39020813 ~ 39030834 (+) True LOC120563022
XM_039807037.1 mRNA upstream 199037 39020813 ~ 39030834 (+) False LOC120563022
XM_039807038.1 mRNA upstream 199037 39020820 ~ 39030834 (+) False LOC120563022
XM_039806201.1 mRNA downstream 33614 39265833 ~ 39278503 (+) True LOC120562489
XM_039806202.1 mRNA downstream 69948 39302167 ~ 39306087 (+) False dcst2
XM_039807026.1 mRNA downstream 80420 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA downstream 89411 39321630 ~ 39331516 (+) True LOC120563019
XM_039807020.1 mRNA downstream 159729 39391948 ~ 39419673 (+) True LOC120563011
TU106631 other upstream 518862 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 562347 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 785201 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 909442 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 69820 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 81770 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 201242 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 201242 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 228229 39460448 ~ 39463841 (+) True G79722

Expression Profile