RNA id: TU106602


Basic Information

Item Value
RNA id TU106602
length 441
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC120562999
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38594045 ~ 39098913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgttattgtggtcatggtgttgtgtttgttattgtggtcatggtgttgtgttattgtggtcatggtgttgtgttattgtggttatggtgttgtgttgtgttattgtgatcATGGTGTTGTGTTTGCAGGAAGAGAGCAGCAGGTCTGGATCAGACAGCCGTGGGACGGGATGGGGAACAACAGCACACAGATAACATCTACAGCAATAACTTCTTGCCGCTTGCTGAGCAGCAGGGAccccgcagtgctgtggaggaagtcagCTACGCCTCGGTCCAGTTCACACACAAGAAGCAGGCCAGacCGGCAGAAGAGGTGGAGGACTCCATCATCTACAGCTCTGTAGCCAGAACAGGCTGAAGACAAACCACACCATGATGGCAgataaactttttttaaattttaaattttaaaaaaacatttgaaaaataacttctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106695 lncRNA upstream 72709 39020939 ~ 39022181 (+) True G79660
TU106692 lncRNA upstream 86000 39008640 ~ 39008890 (+) True G79657
TU106687 lncRNA upstream 87886 38975402 ~ 39007004 (+) True G79653
TU106662 lncRNA upstream 207692 38886728 ~ 38887198 (+) True G79639
TU106652 lncRNA upstream 216888 38874927 ~ 38878002 (+) True G79635
XR_005639901.1 lncRNA downstream 21698 39120310 ~ 39121952 (+) True LOC120563035
TU106716 lncRNA downstream 37874 39136486 ~ 39136756 (+) True G79679
TU106722 lncRNA downstream 92822 39191434 ~ 39193622 (+) True G79685
TU106723 lncRNA downstream 95368 39193980 ~ 39194992 (+) True G79686
TU106600 lncRNA downstream 131259 39229871 ~ 39232219 (+) True G79592
XM_039807035.1 mRNA upstream 64056 39020810 ~ 39030834 (+) False LOC120563022
XM_039807036.1 mRNA upstream 64056 39020813 ~ 39030834 (+) True LOC120563022
XM_039807037.1 mRNA upstream 64056 39020813 ~ 39030834 (+) False LOC120563022
XM_039807038.1 mRNA upstream 64056 39020820 ~ 39030834 (+) False LOC120563022
XM_039807039.1 mRNA upstream 64056 39024434 ~ 39030834 (+) False LOC120563022
XM_039806201.1 mRNA downstream 167221 39265833 ~ 39278503 (+) True LOC120562489
XM_039806202.1 mRNA downstream 203555 39302167 ~ 39306087 (+) False dcst2
XM_039807026.1 mRNA downstream 214027 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA downstream 223018 39321630 ~ 39331516 (+) True LOC120563019
XM_039807020.1 mRNA downstream 293336 39391948 ~ 39419673 (+) True LOC120563011
TU106631 other upstream 383881 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 427366 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 650220 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 774461 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 203427 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 215377 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 334849 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 334849 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 361836 39460448 ~ 39463841 (+) True G79722

Expression Profile