RNA id: XR_005639902.1


Basic Information

Item Value
RNA id XR_005639902.1
length 214
lncRNA type intronic
GC content 0.50
exon number 3
gene id LOC120563036
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38642548 ~ 38647914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATCTGACTGCAAAGGATTCTGGGAACTACACCTGTGGTTTGAAGAGGAACAACGGCACCCTCTCCGCCCCATACAGCCTGCACTTGGGAGCAGAAGAGGAAGGAACTAAAGCCTTTGacccactgctggctgttcatCTGCTTCTCTTCACTCTGCACACTGTTTTCATCGTCATAGTAACGGCCATCATGATCAAAAGGACAtgcatttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639903.1 lncRNA upstream 30698 38611259 ~ 38611869 (+) True LOC120563037
TU106568 lncRNA upstream 86282 38556066 ~ 38556285 (+) True G79568
TU106281 lncRNA upstream 120750 38456643 ~ 38521817 (+) True G79373
TU106304 lncRNA upstream 188741 38453146 ~ 38453826 (+) True G79392
TU106276 lncRNA upstream 230160 38405477 ~ 38412407 (+) True G79370
TU106615 lncRNA downstream 22266 38666272 ~ 38673012 (+) True G79605
TU106614 lncRNA downstream 28005 38672011 ~ 38673012 (+) False G79605
TU106618 lncRNA downstream 28409 38672415 ~ 38673012 (+) False G79605
TU106620 lncRNA downstream 32730 38676736 ~ 38677502 (+) False cpne4a
TU106621 lncRNA downstream 32730 38676736 ~ 38732554 (+) False cpne4a
XM_039807024.1 mRNA upstream 50072 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA upstream 51671 38581518 ~ 38590896 (+) False LOC120563014
XM_039806199.1 mRNA upstream 66999 38525204 ~ 38575568 (+) True tg
XM_039806195.1 mRNA upstream 187008 38433974 ~ 38455559 (+) True cmtm6
XM_039807031.1 mRNA upstream 214082 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039807015.1 mRNA downstream 41773 38685779 ~ 38780360 (+) False cpne4a
XM_039807017.1 mRNA downstream 41773 38685779 ~ 38780360 (+) False cpne4a
XM_039807016.1 mRNA downstream 53526 38697532 ~ 38780360 (+) True cpne4a
XM_039807018.1 mRNA downstream 240284 38884290 ~ 38903260 (+) True plin6
XM_039807032.1 mRNA downstream 351147 38995153 ~ 39009576 (+) True LOC120563021
TU106301 other upstream 197897 38433993 ~ 38444670 (+) False cmtm6
TU106244 other upstream 321960 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 322138 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 338879 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 496789 38087976 ~ 38145778 (+) False nek11
TU106613 other downstream 22266 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 47640 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 658033 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 669983 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 789455 39433461 ~ 39454292 (+) True G79713

Expression Profile