RNA id: XM_039807016.1


Basic Information

Item Value
RNA id XM_039807016.1
length 3681
RNA type mRNA
GC content 0.49
exon number 15
gene id cpne4a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38676736 ~ 38780360 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTCACATTTTGTTCAGCAAACATGTTCTGGCTGTTCTGCTTGCATCTATTCTGATCATGACAGGAAACACTCCCATGcaattataaaatgtaaatcaGATATGAAGTGATCACATCTACACAGTGAAGCTGGAAGAAGTTTTCCTGTCTGTTATTATGCAATtacgcaattacagtaatgtattcctttttgctgcaacgccaacatggcatcatgactttgtgtaaacatacacgcccactttcttaagccaagtggcgtgttatctgtacgcagtTTGAGCTATCCGCCTGGatgaacatgcaaactccacacagaaaagcCTGAGATAACCTGGGTTTGAACCCAGAagcttcttgctgtgaggcagaagtgcttaccactgagccaccgtgctgcctaAGTTGGATCAGTGACCCAACACAGTCGCCAGATGTTTCTTATCTGGACATATTTGACTGATTCACTTTCAgtgttaatgtatatatattgtttttttctttgcgcTGCAGACTTCCTGTCCCGCCTCCAACCATGAGTGACATCTATGAGTCTGCAGCGAACTCGCTGGGTTTGTTCAGCAGTCCTTGTCTGACCAAAGTGGAGCTGAGGGTCACCTGCAAAGGGATCCCCGACCGGGACGCTCTGTCCAAACCCGACCCCTGCTTCGTCCTCAAGATGCAGTCCCACGGACAGTGGATGGAGgtgGACCGGACAGAGGTGATTCGCAGCTGTGTGAACCCCACCTACTCCAAAGTCTTCACgctggacttttattttgaagaggtGCAGCGTCTGCGCCTGGAACTCTACGACGTCAACAGCAGCCACAACGGCCTGAAGGAGGCCGACTTCCTGGGCTCGCTGGAGTGCACGCTGGGACAGatcgTCTCTCAGAGGAAGCTGTGCAAAGCGTTGCTCAGACCAGGAGGCAGCGTGGGGAAATCCATCATCACGataacAGCAGAGGAGTTGACGGGGAACGACGACTACATCGAGCTCTCGTTCAGCGCCAGGAAACTGGACGATAAGgaCTTCTTTAGTAAATCTGACCCCTTCCTGGAGATCTACAGGCTGAACGATGACGCCACGATGCAACTCGTCTACAGAACGGagacgGTGATGAATAATCTGAACCCGGTGTGGAAAACCTTCAAAGTTTCTCTCAACTCGCTATGCAGCGGAGACCACGAACGCAAGCTGCagTGCACCGTGTGGGACTGGGACTCAAACGGGAAACACGACTACATTGGCGAGTTCGAGGCCACGTTCAAAGAGATGAGAGGAGCCATCGATGGACGACAGGTGCAGTGGCCATGCTTGAATCCGAAATACAGAGTCAAGAAGAAGAACTACAAGAACTCTGGGATCGTCATTCTGAACCAGTGCAAGATCATCAAGATGCACTCGTTTCTGGATTATATCATGGGAGGCTGTCAGATCCAGTTCAcaGTAGCCATCGACTTCACGGCTTCTAACGGAGATCCTCGGAACAGCTGCTCGCTGCACTACATCCACCCGTACCAGCCCAACGAGTACCTGAAGGCTCTGGTGGCAGTGGGCGAGATCTGCCAGGACTACGACAGTGACAAAATGTTCCCGGCGTTCGGCTTCGGGGCTCAGATCCCTCCGGACTACAAGgTCTCCCACGACTTTGCAGTGAATTTTAATGAGGACAACCCTGAGTGTGCAGGTATCCAGGGCGTGGTGGAGGCCTACCAGGCCTGCCTCCCCAAACTGCAGCTCTATGGTCCCACCAACATCGCCCCCATCATCCAGAAGGTGGCCAACACCGCCTCGCAGGAGGTCCACACCAAAGAGGCCATGCAATACTTCATCCTGCTGATCCTGACAGACGGCGTCATCACTGACATGGCTGACACGAGGGAGGCCATCGTCCAGGCCTCCCACCTCCCCATGTCGGTCATCATCGTCGGGGTAGGGAGCGCCGACTTCAGCGACATGCAGATGCTGGACGGCGACGACGGGATTCTGCGATCGCTCAAGGGAGAGCCCGTCCTACGGGACATCGTCCAGTTCGTTCCCTTCCGCAACTTCAAACACGCATCTCCAGCTGCTCTGGCTAAAAGCGTGTTAGCAGAGGTGCCCAACCAGGTGGTGGACTACTACAACAGCAAGGGCATCAAGCCCAAAGTGCCCAGGCAGTTCGGACCCTGAGCACCGCCGCCGTTGTCCCCGCCACAGCTGCCCCCAGACTGCACGAGCTCCTGGACTGAGAAAATtgtttactgtatttatttatttttgttgttgatgtgaATGTTAAAAGGTGCAACTTGCAGCATTTTACCACGACGAAATGGCTCATTTTTACCCACACAAGAAGCCTGTCAGCCTCAGTACTGCATTTTACATTGGGATGGGTTTTTACAGGAACTTCTGGATTGCTTTATGGCACAGGTAGAAGGTTTTTCATTACATGTCATCATCACGTACACGTAGATACAGACCCTTCGccatagcctgacgtgcaccatCCCAGAAACTTAACTCCACATTGTAGCGACGCAAAGtgcaactgtgattggtccgcttGTTTGTGGCTTGCTagtgttgctttttccaactCATTACCGGCTGCTCCTTCCTCGTGGAGCCGTGGAAATGgctaacttttcctgctacagacaAACTTTGTTTACCACTACAAACCAGGGTTTACACTTATTAGTAGCCTTTGTAAGCAAATTAGCATGATTTGTAGCATTCCTTtcagtatatttttttcttttcttttgtgacAGTGTTTATAATAACGACTGGGCCGCATCAGCATTTATAACAGTGACTTTTCAGATCAGAATCTGTTCATTTCAGTAGACATTTGTGTACAGAGGCAAAGGAAATCTATGCAGAGCTTTCACGTACAGGAAATTTGCATAGTGAACTGACACGTGCGTTTGTGGGGTAGCCAACTGTTTTGTTGACAGCGAACAGATGTAACAGCgtccaaaacaaagaaagctatcATCTTAGCTTCGTCACACCATCCGGTTTTATATAACGCTCCTCTGCCAGAGTATAAACTGCCAACATGTATGGTATAATCTCTTGAAGAAACGGTCATCACCAGGGTGCAATTTGTGAGCAAATCAAAACATGCAATAATTAAATCCACCTTTCAATACGATGGATATAGTGCGACTCGTCACATTAAATAAAGCGCTTTCAAGCtagcgtcccggagctctgtagcggctaaatacaaccagcacatgacagcgctttacttagtttgaaatattttctattttaggtatataatatgtGGTCTaatggtgaagtagcattgatcattTTGAGGGGACAAaaaattcagcagaggcagggatatgtaaACCAGAGAGGGCGAAATCCCAAGCATCCCTCCCTGACAAATCAATCGCACCCTGGTCATGAGTTTTTGTCCAGTTAGCAGCTAAGTCAGCTAGCATATTGAGCTGCTTTGGCTGGCTAGCGTCGGCATGTTAGGCTTCCTGCACATTGCctgtgtggcgtgagcgtgtcagctgcgtggcgtgttttatttcggctcccatgttaacaggttagagcttgcacattgcctgcgtgacacgcacttCTCAGGTGTGGCACAAGCCaatgcgtgcatgctagaaaaaGGACCGACTCCTATTTTTCACTTGACACTCAAGCG

Function

GO: NA

KEGG:

id description
K24525 CPNE4_6_7; copine 4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106620 lncRNA upstream 20030 38676736 ~ 38677502 (+) False cpne4a
TU106615 lncRNA upstream 24520 38666272 ~ 38673012 (+) True G79605
TU106614 lncRNA upstream 24520 38672011 ~ 38673012 (+) False G79605
TU106618 lncRNA upstream 24520 38672415 ~ 38673012 (+) False G79605
XR_005639902.1 lncRNA upstream 53526 38642567 ~ 38644006 (+) False LOC120563036
TU106639 lncRNA downstream 16258 38796618 ~ 38797157 (+) True G79623
TU106642 lncRNA downstream 24213 38804573 ~ 38806484 (+) True G79625
TU106645 lncRNA downstream 72234 38852594 ~ 38853108 (+) True G79628
TU106652 lncRNA downstream 94567 38874927 ~ 38878002 (+) True G79635
TU106662 lncRNA downstream 106368 38886728 ~ 38887198 (+) True G79639
XM_039807024.1 mRNA upstream 105037 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA upstream 106636 38581518 ~ 38590896 (+) False LOC120563014
XM_039806199.1 mRNA upstream 121964 38525204 ~ 38575568 (+) True tg
XM_039806195.1 mRNA upstream 241973 38433974 ~ 38455559 (+) True cmtm6
XM_039807031.1 mRNA upstream 269047 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039807018.1 mRNA downstream 103930 38884290 ~ 38903260 (+) True plin6
XM_039807032.1 mRNA downstream 214793 38995153 ~ 39009576 (+) True LOC120563021
XM_039807033.1 mRNA downstream 214794 38995154 ~ 39009576 (+) False LOC120563021
XM_039807034.1 mRNA downstream 214811 38995171 ~ 39009576 (+) False LOC120563021
XM_039807035.1 mRNA downstream 240450 39020810 ~ 39030834 (+) False LOC120563022
TU106613 other upstream 30008 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 252862 38433993 ~ 38444670 (+) False cmtm6
TU106244 other upstream 376925 38170054 ~ 38320607 (+) True G79351
TU106594 other downstream 521679 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 533629 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 653101 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 653101 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 680088 39460448 ~ 39463841 (+) True G79722

Expression Profile