RNA id: TU106633


Basic Information

Item Value
RNA id TU106633
length 361
lncRNA type read_through
GC content 0.45
exon number 3
gene id G79617
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38716388 ~ 38800638 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTTAATGTAGAGAGAAGCAGAATAACAATTACCTCCGAGATCTGCAGCTGTCCCTATGACAAGCTGCCTGAAGTATTCAACCTTCACttacaaacacatatatatactttacttgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatacacacacacacacacacacagacacacacatacacacagacacacacacacacacacacacacacacacacacacacagacactctaacacacacacacacacacacagacacacacacacacacacacacacacacacacaaacatagacaacccacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106620 lncRNA upstream 38886 38676736 ~ 38677502 (+) False cpne4a
TU106615 lncRNA upstream 43376 38666272 ~ 38673012 (+) True G79605
TU106614 lncRNA upstream 43376 38672011 ~ 38673012 (+) False G79605
TU106618 lncRNA upstream 43376 38672415 ~ 38673012 (+) False G79605
TU106607 lncRNA upstream 68474 38642548 ~ 38647914 (+) True LOC120563036
TU106642 lncRNA downstream 3935 38804573 ~ 38806484 (+) True G79625
TU106645 lncRNA downstream 51956 38852594 ~ 38853108 (+) True G79628
TU106652 lncRNA downstream 74289 38874927 ~ 38878002 (+) True G79635
TU106662 lncRNA downstream 86090 38886728 ~ 38887198 (+) True G79639
TU106687 lncRNA downstream 174764 38975402 ~ 39007004 (+) True G79653
XM_039807024.1 mRNA upstream 123893 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA upstream 125492 38581518 ~ 38590896 (+) False LOC120563014
XM_039806199.1 mRNA upstream 140820 38525204 ~ 38575568 (+) True tg
XM_039806195.1 mRNA upstream 260829 38433974 ~ 38455559 (+) True cmtm6
XM_039807031.1 mRNA upstream 287903 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039807018.1 mRNA downstream 83652 38884290 ~ 38903260 (+) True plin6
XM_039807032.1 mRNA downstream 194515 38995153 ~ 39009576 (+) True LOC120563021
XM_039807033.1 mRNA downstream 194516 38995154 ~ 39009576 (+) False LOC120563021
XM_039807034.1 mRNA downstream 194533 38995171 ~ 39009576 (+) False LOC120563021
XM_039807035.1 mRNA downstream 220172 39020810 ~ 39030834 (+) False LOC120563022
TU106631 other upstream 5379 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 48864 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 271718 38433993 ~ 38444670 (+) False cmtm6
TU106244 other upstream 395781 38170054 ~ 38320607 (+) True G79351
TU106594 other downstream 501401 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 513351 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 632823 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 632823 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 659810 39460448 ~ 39463841 (+) True G79722

Expression Profile