RNA id: TU106642


Basic Information

Item Value
RNA id TU106642
length 203
lncRNA type intronic
GC content 0.38
exon number 2
gene id G79625
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38804573 ~ 38806484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaactaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgacactagagtcatatatatgtgagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106633 lncRNA upstream 3935 38716388 ~ 38800638 (+) True G79617
TU106639 lncRNA upstream 7416 38796618 ~ 38797157 (+) True G79623
TU106621 lncRNA upstream 72019 38676736 ~ 38732554 (+) False cpne4a
TU106620 lncRNA upstream 127071 38676736 ~ 38677502 (+) False cpne4a
TU106615 lncRNA upstream 131561 38666272 ~ 38673012 (+) True G79605
TU106645 lncRNA downstream 46110 38852594 ~ 38853108 (+) True G79628
TU106652 lncRNA downstream 68443 38874927 ~ 38878002 (+) True G79635
TU106662 lncRNA downstream 80244 38886728 ~ 38887198 (+) True G79639
TU106687 lncRNA downstream 168918 38975402 ~ 39007004 (+) True G79653
TU106692 lncRNA downstream 202156 39008640 ~ 39008890 (+) True G79657
XM_039807015.1 mRNA upstream 24213 38685779 ~ 38780360 (+) False cpne4a
XM_039807017.1 mRNA upstream 24213 38685779 ~ 38780360 (+) False cpne4a
XM_039807016.1 mRNA upstream 24213 38697532 ~ 38780360 (+) True cpne4a
XM_039807024.1 mRNA upstream 212078 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA upstream 213677 38581518 ~ 38590896 (+) False LOC120563014
XM_039807018.1 mRNA downstream 77806 38884290 ~ 38903260 (+) True plin6
XM_039807032.1 mRNA downstream 188669 38995153 ~ 39009576 (+) True LOC120563021
XM_039807033.1 mRNA downstream 188670 38995154 ~ 39009576 (+) False LOC120563021
XM_039807034.1 mRNA downstream 188687 38995171 ~ 39009576 (+) False LOC120563021
XM_039807035.1 mRNA downstream 214326 39020810 ~ 39030834 (+) False LOC120563022
TU106631 other upstream 93564 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 137049 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 359903 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 484144 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 495555 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 507505 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 626977 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 626977 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 653964 39460448 ~ 39463841 (+) True G79722

Expression Profile