RNA id: TU106652


Basic Information

Item Value
RNA id TU106652
length 232
lncRNA type intronic
GC content 0.49
exon number 4
gene id G79635
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38874927 ~ 38878002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtatgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtctgtgtgtgtctctgtgtgtgtctctgtgtgtctgtgtgtgtctctgtgtgtgtctctctgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106645 lncRNA upstream 21819 38852594 ~ 38853108 (+) True G79628
TU106642 lncRNA upstream 68443 38804573 ~ 38806484 (+) True G79625
TU106633 lncRNA upstream 74289 38716388 ~ 38800638 (+) True G79617
TU106639 lncRNA upstream 77770 38796618 ~ 38797157 (+) True G79623
TU106621 lncRNA upstream 142373 38676736 ~ 38732554 (+) False cpne4a
TU106662 lncRNA downstream 8726 38886728 ~ 38887198 (+) True G79639
TU106687 lncRNA downstream 97400 38975402 ~ 39007004 (+) True G79653
TU106692 lncRNA downstream 130638 39008640 ~ 39008890 (+) True G79657
TU106695 lncRNA downstream 142937 39020939 ~ 39022181 (+) True G79660
TU106602 lncRNA downstream 216888 39094890 ~ 39098612 (+) False LOC120562999
XM_039807015.1 mRNA upstream 94567 38685779 ~ 38780360 (+) False cpne4a
XM_039807017.1 mRNA upstream 94567 38685779 ~ 38780360 (+) False cpne4a
XM_039807016.1 mRNA upstream 94567 38697532 ~ 38780360 (+) True cpne4a
XM_039807024.1 mRNA upstream 282432 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA upstream 284031 38581518 ~ 38590896 (+) False LOC120563014
XM_039807018.1 mRNA downstream 6288 38884290 ~ 38903260 (+) True plin6
XM_039807032.1 mRNA downstream 117151 38995153 ~ 39009576 (+) True LOC120563021
XM_039807033.1 mRNA downstream 117152 38995154 ~ 39009576 (+) False LOC120563021
XM_039807034.1 mRNA downstream 117169 38995171 ~ 39009576 (+) False LOC120563021
XM_039807035.1 mRNA downstream 142808 39020810 ~ 39030834 (+) False LOC120563022
TU106631 other upstream 163918 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 207403 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 430257 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 554498 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 424037 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 435987 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 555459 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 555459 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 582446 39460448 ~ 39463841 (+) True G79722

Expression Profile