RNA id: TU106722


Basic Information

Item Value
RNA id TU106722
length 219
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G79685
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39191434 ~ 39193622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAACCAGAGATGGaggaagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccacgtgaGAGTTGCCGTTGTCATGGTGAGATTTTCAGGGTTGTTTCTCTAAATCCCTCAAATATAAATCCAGTCTAATAGGAGATGACATCACAGGtgagaaatgtttgtttttacaatcaGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106716 lncRNA upstream 54678 39136486 ~ 39136756 (+) True G79679
XR_005639901.1 lncRNA upstream 69482 39120310 ~ 39121952 (+) True LOC120563035
TU106602 lncRNA upstream 92822 39094890 ~ 39098612 (+) False LOC120562999
TU106695 lncRNA upstream 169253 39020939 ~ 39022181 (+) True G79660
TU106692 lncRNA upstream 182544 39008640 ~ 39008890 (+) True G79657
TU106723 lncRNA downstream 358 39193980 ~ 39194992 (+) True G79686
TU106600 lncRNA downstream 36249 39229871 ~ 39232219 (+) True G79592
TU106726 lncRNA downstream 37322 39230944 ~ 39307739 (+) True G79689
TU106595 lncRNA downstream 106546 39300168 ~ 39301388 (+) True G79587
TU106591 lncRNA downstream 127810 39321432 ~ 39323436 (+) False LOC120563019
XM_039807004.1 mRNA upstream 92521 38594045 ~ 39098913 (+) True LOC120562999
XM_039807035.1 mRNA upstream 160600 39020810 ~ 39030834 (+) False LOC120563022
XM_039807036.1 mRNA upstream 160600 39020813 ~ 39030834 (+) True LOC120563022
XM_039807037.1 mRNA upstream 160600 39020813 ~ 39030834 (+) False LOC120563022
XM_039807038.1 mRNA upstream 160600 39020820 ~ 39030834 (+) False LOC120563022
XM_039806201.1 mRNA downstream 72211 39265833 ~ 39278503 (+) True LOC120562489
XM_039806202.1 mRNA downstream 108545 39302167 ~ 39306087 (+) False dcst2
XM_039807026.1 mRNA downstream 119017 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA downstream 128008 39321630 ~ 39331516 (+) True LOC120563019
XM_039807020.1 mRNA downstream 198326 39391948 ~ 39419673 (+) True LOC120563011
TU106631 other upstream 480425 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 523910 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 746764 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 871005 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 108417 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 120367 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 239839 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 239839 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 266826 39460448 ~ 39463841 (+) True G79722

Expression Profile