RNA id: TU106757


Basic Information

Item Value
RNA id TU106757
length 589
RNA type TUCP
GC content 0.48
exon number 2
gene id G79713
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39433461 ~ 39454292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctctgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtctctgtgtgttatgtgtgtgtgtgtgtgtgtggtctctgtgtgttatgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtctgtgtgtctctctgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtctgtctccgtgtgtgtgtgtgtctgtgtgtgtctgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtctgtctctgtctctgtgtgtctctctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtctgtctgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtatacagttcctgaatctgtcttcatttcagatcaacaaaggtcattttaaaagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106764 lncRNA upstream 340 39432313 ~ 39433121 (+) True G79717
TU106577 lncRNA upstream 8563 39382036 ~ 39424898 (+) False G79573
TU106578 lncRNA upstream 8563 39384945 ~ 39424898 (+) False G79573
TU106576 lncRNA upstream 8563 39417885 ~ 39424898 (+) True G79573
TU106760 lncRNA upstream 34174 39398655 ~ 39399287 (+) True G79714
XR_005639897.1 lncRNA downstream 21483 39475775 ~ 39479389 (+) True LOC120563031
XR_005639895.1 lncRNA downstream 30659 39484951 ~ 39485980 (+) True LOC120563029
XR_005639896.1 lncRNA downstream 45054 39499346 ~ 39501137 (+) True LOC120563030
TU107047 lncRNA downstream 104816 39559108 ~ 39575672 (+) False G79903
TU107048 lncRNA downstream 104816 39559108 ~ 39559992 (+) True G79903
XM_039807012.1 mRNA upstream 6341 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 6341 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 6341 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 13788 39391948 ~ 39419673 (+) True LOC120563011
XM_039807026.1 mRNA upstream 87029 39312639 ~ 39346432 (+) True LOC120563015
XM_039806080.1 mRNA downstream 310881 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 326944 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 357563 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 470033 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 628738 40083030 ~ 40093260 (+) True LOC120562361
TU106586 other upstream 112136 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 129391 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 722452 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 765937 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 988791 38433993 ~ 38444670 (+) False cmtm6
TU106769 other downstream 6156 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 313635 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 862447 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 880070 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 962786 40417078 ~ 40420429 (+) False LOC120562499

Expression Profile